Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E23
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 31 0.76
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 29 3.1
U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical pr... 28 4.1
U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical pr... 28 4.1
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 28 4.1
AC025721-7|AAK29911.3| 668|Caenorhabditis elegans Half transpor... 28 5.4
U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plu... 27 9.4
AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein. 27 9.4
AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein. 27 9.4
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 27 9.4
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 30.7 bits (66), Expect = 0.76
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 5 EDFYIKVCLVA**KRNRQSFGFIYNIPF 88
EDF ++VC + KR R FG I IPF
Sbjct: 112 EDFGVQVCAILSKKRKRPKFGVIQVIPF 139
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +3
Query: 303 ETRGLVHRVNHALKNFMNKSDLHQKRTVAFSFHRLSNHNDVKEVFTLKKKY 455
E + + + + H +K +K+ + + +AFS + ++ KE+F+ KK +
Sbjct: 943 EEKKVQNEIKHYIKLVNSKAAIFDQLAIAFSLAKPETQSNFKEMFSNKKAF 993
>U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical
protein R08C7.10b protein.
Length = 748
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 327 VNHALKNFMNKSDLHQKRTVAFSFHRL 407
V HAL+ MNK+ H + +V S+H L
Sbjct: 655 VVHALQQVMNKASAHMEGSVIASYHAL 681
>U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical
protein R08C7.10a protein.
Length = 746
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 327 VNHALKNFMNKSDLHQKRTVAFSFHRL 407
V HAL+ MNK+ H + +V S+H L
Sbjct: 653 VVHALQQVMNKASAHMEGSVIASYHAL 679
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 273 RETLKKRTVYETRGLVHRVNHALKNFMNKSDLH--QKRTVAFSFHRLSNHNDVKEV 434
R++ ++Y+ + ALK+++ + L QKR + F++HRL N K V
Sbjct: 30 RKSSSMPSIYDLQQQAAPPTPALKHYIYDTRLSKIQKRAIRFTWHRLQTRNGGKRV 85
>AC025721-7|AAK29911.3| 668|Caenorhabditis elegans Half transporter
(pgp related)protein 6 protein.
Length = 668
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 321 HRVNHALKNFMNKSDLHQKRTVAFSFHRLSNHNDVKEVFTLKKKYILQEG 470
H V AL N M + RTV HRLS + ++ +K K L+ G
Sbjct: 601 HMVQEALNNVM------KGRTVLIIAHRLSTIRSAQMIYVIKDKKALESG 644
>U70850-3|AAB09122.3| 596|Caenorhabditis elegans Zinc finger plus
homeodomain, axonguidance protein 1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 199 PPQTPTAIANPPPKRGVYGKPPFF*RIPMSSSGRLLVKWNIVNETKTLSVTFSLS 35
P Q P+A A+P PK V +P + + + ++ E+ T +V+ SLS
Sbjct: 141 PTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEVKTEDSVPEESITPAVSMSLS 195
>AY289599-1|AAP43944.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 199 PPQTPTAIANPPPKRGVYGKPPFF*RIPMSSSGRLLVKWNIVNETKTLSVTFSLS 35
P Q P+A A+P PK V +P + + + ++ E+ T +V+ SLS
Sbjct: 141 PTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEVKTEDSVPEESITPAVSMSLS 195
>AY224511-1|AAP37457.1| 596|Caenorhabditis elegans ZAG-1 protein.
Length = 596
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 199 PPQTPTAIANPPPKRGVYGKPPFF*RIPMSSSGRLLVKWNIVNETKTLSVTFSLS 35
P Q P+A A+P PK V +P + + + ++ E+ T +V+ SLS
Sbjct: 141 PTQEPSAPASPEPKIEVVDEPEVSSEVKTEVKTEVKTEDSVPEESITPAVSMSLS 195
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 212 QHLLPTTNAYCDRQPASQAWRLWQTPLF 129
QHL+ T +C+R+P +Q +L + PLF
Sbjct: 411 QHLVETITLHCERRP-NQLTQLNEKPLF 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,093
Number of Sequences: 27780
Number of extensions: 294666
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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