Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E22
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    29   0.66 
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    27   2.7  
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   3.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    26   4.7  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    25   6.2  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   8.1  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   8.1  

>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 28.7 bits (61), Expect = 0.66
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 221 REKMMEFYERVSGARMHAAYIRPGGVSLDMPIGLMDDIY 337
           ++KMMEF+  +  +  H   I    +    PI   DD+Y
Sbjct: 390 KDKMMEFFNSLQQSNQHYVPIIDAAIYAANPINRSDDVY 428


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 15  PARLRLHDVQRAVLQLAVENCSTSIYH 95
           P  +   DV +  L+LAV+NC  +I H
Sbjct: 141 PHTIEAVDVSKKALKLAVKNCDRAIAH 167


>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 556 HVELDLIVRVVR-LGLAEIPFDTGTAQHHP--AEAIIKSILSGDDSYILGPLNP 404
           H+  +LI  + + L     P+D   +QH P   EA   SI  GD S +L P++P
Sbjct: 49  HISDELINAIYKELKSPVSPWDKNISQHSPWLLEAASNSI--GDSSPLLSPISP 100


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +2

Query: 146 NHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGV 298
           NH +A G H  D+  +TP F    +  K + FY    G  +    I PG +
Sbjct: 816 NHPIAGGVHLPDLTVVTPVF----DNNKDIIFYCAARGHMVDVGGITPGSM 862


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 338 EFSSKFAERLDEVEDVLTTNRIWVQRTKDIGVV 436
           E+ +K+  R  E  DVL  NR+  Q  KD+G++
Sbjct: 228 EYINKYRGRYSEGPDVLRKNRL--QAQKDLGLI 258


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 161 VGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYIRPGGVSLDMP 313
           + T AL +G   PF    EE  ++ E+ +++   R     I PG  S  +P
Sbjct: 95  ISTSALLLGV--PFMMSLEEEAQLTEYEKQIKDQRGANEVIAPGATSGALP 143


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 508 EIPFDTGTAQHHPAEAIIKSILSGDDSYILGPLNP 404
           ++P+  G   +HP E +I        +Y+   L+P
Sbjct: 170 QVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSP 204


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 530 AYDQVEFDVPIGTHGDCY 583
           +YD+V +  P G +G CY
Sbjct: 469 SYDEVGYHSPFGIYGACY 486


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 577 VPVGADGHVELDLIVRVVRLGLAEIPFDTGTAQHH 473
           V VGA G      +V  +R+ +  + FDT  AQ H
Sbjct: 48  VKVGATGSTSGSRVVMKLRILVENMDFDTKAAQLH 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,220
Number of Sequences: 5004
Number of extensions: 45460
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)