Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E22
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532... 30 1.2
09_04_0658 + 19275129-19275363,19275453-19275544,19276440-192765... 29 2.7
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 29 2.7
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 29 2.7
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 28 6.3
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 28 6.3
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 28 6.3
11_03_0051 + 9324941-9325192,9326033-9326305 27 8.3
10_08_0823 + 20819134-20819314,20819927-20820252 27 8.3
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 27 8.3
>05_05_0165 +
22851863-22852566,22852811-22852964,22853112-22853261,
22853769-22853930,22854070-22854242,22854330-22854396,
22854556-22854722,22855216-22855374,22856187-22856276,
22856392-22856483,22856587-22856681,22857328-22857405,
22858364-22858459,22859132-22859206,22859290-22859381,
22859462-22859624,22859734-22859794,22860016-22860116,
22860567-22860614
Length = 908
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +1
Query: 133 HPYTEPHNGGRDPRAGRGRSHSVLLAVRGEREDDGVLR---ESQRSQNARRI 279
H + HNGG D R+ ++ S L A+ G+ +GV+ ES S+ RR+
Sbjct: 165 HEHHHHHNGGSDGRSALRQALSSLAALVGKWSSEGVVEGVAESGESELLRRL 216
>09_04_0658 +
19275129-19275363,19275453-19275544,19276440-19276509,
19276617-19276735,19277026-19277122,19277229-19277308,
19277443-19277637,19277727-19277810,19277931-19277991,
19278682-19278742,19279162-19279255,19279357-19279429,
19279834-19279916,19280008-19280154
Length = 496
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 583 VAVPVGADGHVELDLIVRVVRLGLAE 506
V +P G D HV +DLIV+ +R L +
Sbjct: 253 VIIPRGGDNHVAIDLIVQHIRTKLGQ 278
>09_02_0322 -
7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -1
Query: 295 PAGADVCGVHSGSADXXXXXXXXXXXXEQPEE--RSESAHVQRVGPDRHYVVQYTGDFSE 122
P G+D G+ GS + SE AH Q+ PD H + + D +
Sbjct: 671 PQGSDYLGLSPGSYNPASAHLVPPYKFGNAPSYLESELAH-QKHPPDSHREIAH--DKQQ 727
Query: 121 QSPDVLGAKW 92
Q PDVL ++W
Sbjct: 728 QHPDVLPSRW 737
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 583 VAVPVGADGHVELDLIVRVVRLGLAE 506
V +P G D HV +DLIV+ +R L +
Sbjct: 245 VIIPRGGDNHVAIDLIVQHIRTKLGQ 270
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 110 IRTLFAEITRILNHIMAVG---THALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAY 280
+RTL +++TR+L H+ V H LD +L ++ + + +S A ++
Sbjct: 263 VRTLKSDLTRLLAHVQKVRDEIEHLLDDNEDMAHLYLTRKQLQNQQVEALISSAASNS-- 320
Query: 281 IRPGGVSL 304
I PGG SL
Sbjct: 321 IVPGGTSL 328
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 142 TEPHNGGRDPRAGRGRSHSVLLAVRGEREDD 234
T P + GR P +GRGR+ GE DD
Sbjct: 7 TRPPSAGRPPSSGRGRADDADEREEGEIADD 37
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 215 EEREKMMEFYERVSGARMHAAYIRPGGVSLDMPIGLMDDIYEFSSKFAERLDEVEDVL 388
+E E ++E+Y VSG RM G +S + IG + + E S ++ +DE+ + L
Sbjct: 109 QELEGLLEYYREVSGHRMQ---FEVGNLSTNAAIGCL--LEESSLGLSKLVDEIYEKL 161
>11_03_0051 + 9324941-9325192,9326033-9326305
Length = 174
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 296 VSLDMPIGLMDDIYEFSSKFAERLDEVEDVLTTN--RIWVQRTKDIGVVTAQDALNYGF- 466
V + I L+ D E+ F D + + + R+WV++T+D+ A+DAL++ F
Sbjct: 25 VQVGNDIMLLRDRLEWLQAFVRDADRRRRLASDDFTRVWVRQTRDV-AFDAEDALDHFFH 83
Query: 467 --SGVMLRGSGIK 499
M R +G K
Sbjct: 84 KAPAAMQRTAGCK 96
>10_08_0823 + 20819134-20819314,20819927-20820252
Length = 168
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 508 EIPFDTGTAQHHPAEAIIKSILSGD 434
E+P+ G+A HP+ +++ SGD
Sbjct: 93 EVPYTVGSAHLHPSACLVRLASSGD 117
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 443 QDALNYGFSGVMLRGSGIKWDLRKSQPYDAYDQ 541
Q +++ S ML +G+ WD R P +DQ
Sbjct: 1644 QPIIHFSPSDTMLLWNGVLWDRRSPNPVHQFDQ 1676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,593
Number of Sequences: 37544
Number of extensions: 354734
Number of successful extensions: 1011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -