Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E21
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.0  
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    25   5.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.3  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    25   5.3  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.0  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    25   7.0  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   7.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   9.2  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   9.2  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -1

Query: 288 LKQASHTPTILWRSSSIPFGDFSSDISAPRPLKYFRSSN 172
           +K+A H   +L  SSS+P  +F+  +S+P  LKY  +S+
Sbjct: 571 VKKAEHLEPLLNVSSSVPSKNFT--VSSPDHLKYGNTSS 607


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 452 RLYNNLETNSPLRYHVYYHVIELA 523
           RLY+ +   + +R++V Y+V+E+A
Sbjct: 246 RLYHIIRAQASIRFYVLYNVLEIA 269


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 26/100 (26%), Positives = 45/100 (45%)
 Frame = -1

Query: 438 SATTPSFGPGALVSLSLNARIRFSPLSKGIDTIIETMLFRIASISDSFASLKQASHTPTI 259
           S+  PS     LVS S +  +  SP++    + I +    +++ S S +++  +S + T 
Sbjct: 668 SSVIPS--SSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTA 725

Query: 258 LWRSSSIPFGDFSSDISAPRPLKYFRSSNA*SSRDISIKT 139
           +  SS+IP    SS +          SS   SS  +S  T
Sbjct: 726 MSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTT 765


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 255 WRSSSIPFGDFSSDISAPR 199
           WR  +  FG F++D+SA R
Sbjct: 316 WRREASKFGGFAADVSAER 334


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 146 MDISLEDQALELRKYFKGLGAEISEEKSP 232
           +D   +D+  ++ K+F+  G  +SEE SP
Sbjct: 276 VDEERQDRVSKISKHFQDSGTPVSEEVSP 304


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = +2

Query: 152 ISLEDQALELRKYFKGLGAEISEEKSPKGI--EDDLHKIVGVCDACFKEANESDIEAIL 322
           I+L D      K     G ++       G+  + DLH I+G    C  E   SD+ A L
Sbjct: 230 ITLSDGTKRPCKIMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 298  VCFFKAGIAYSYNFMEIILYTFWRFFFRYLCTKAFKI 188
            +CF  + I  ++ +M  ++   WRFF+    TK +KI
Sbjct: 1158 ICFLISVINQNF-WMSTLISQAWRFFWGSKLTKLWKI 1193


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = +2

Query: 176 ELRKYFKGLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEANESDIEAILNS 328
           EL +Y   L   +IS +K+P+      +E+DL +++ + +   +E+ E+D     NS
Sbjct: 4   ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 345 CQFL*KEGKTLFWHS 389
           C F   EGK +FWHS
Sbjct: 108 CDFNDPEGKRVFWHS 122


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 212 ISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAILN 325
           IS ++  K  +DD  K+    +   KE NE++ EA+ +
Sbjct: 381 ISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = +2

Query: 350 IPLERGENLILAFSERLTKAP----GPKLGVVALQSLWRLYNNLETNSPLRYHVYYHVI 514
           I LE    L+    E + + P     P L + +  SL     N+  N PLR H+Y  ++
Sbjct: 356 ICLEYWSKLVAQLYEEMQQIPMSEMNPLLNLSSPTSLISSNPNMLANLPLRKHIYKDIL 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,105
Number of Sequences: 5004
Number of extensions: 43947
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)