Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E20
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    25   4.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   4.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   6.4  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  

>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 361 QSLDVSQKGLTIMLSSYTKEYLKSNGTVIRYIN 263
           Q L  SQ+ LT  + SY K+Y     T   Y N
Sbjct: 117 QKLQTSQQVLTNQIKSYEKKYYTLKKTKSAYYN 149


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 406 VAWVSNNATSTSRSPQSLDVSQKGLTIMLSSYTKEYLK 293
           VA  +++  S SRSP+S+  SQ   +  + SY ++  K
Sbjct: 47  VADTNSSVPSASRSPESIASSQSNDSAAIPSYRRKRRK 84


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -1

Query: 185 FNKYIYFLLASIYRNILRVVDVVTDGTMFTTRXXXYKDNE 66
           F  ++Y+L++ + RN      V+  G M   R    K+NE
Sbjct: 175 FLHHLYWLISDLTRNESTCCCVLCSGNMTRVRKNLQKENE 214


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -2

Query: 388 NATSTSRSPQSLDVSQKGLTIMLSSYTKEYLKSNGTVIRYINIELTYIS 242
           ++ S+S   +   +S+  + I  S   + ++ +NG  IR  + ELTY++
Sbjct: 803 SSLSSSALSELSYISESSMNIG-SRLDERFIDANGVAIRDFSAELTYLT 850


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 397 VSNNATSTSRSPQSLDVSQ 341
           VS    STS+SP SLDV Q
Sbjct: 157 VSGGNGSTSQSPPSLDVEQ 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,452
Number of Sequences: 5004
Number of extensions: 30105
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)