Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E20
         (500 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 432 HGMAPRGAAWHGYQTMRLALADRLNHWTYHKK 337
           HGM PRG  +  Y    L     L    YH K
Sbjct: 88  HGMLPRGELFSLYYPQLLREMSALFKLFYHAK 119


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -3

Query: 432 HGMAPRGAAWHGYQTMRLALADRLNHWTYHKK 337
           HGM PRG  +  Y    L     L    YH K
Sbjct: 88  HGMLPRGELFSLYYPQLLREMSALFKLFYHAK 119


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 415 WRGVAWVSNNATSTSRSPQSL 353
           W+GV W       TS  P +L
Sbjct: 225 WKGVKWTGKVVYFTSLFPYAL 245


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 415 WRGVAWVSNNATSTSRSPQSL 353
           W+GV W       TS  P +L
Sbjct: 278 WKGVKWTGKVVYFTSLFPYAL 298


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 289 WILGIL*CNLITLSLSLF 342
           W+LG L C +  +  SLF
Sbjct: 118 WVLGPLFCQIYAMLGSLF 135


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 289 WILGIL*CNLITLSLSLF 342
           W+LG L C +  +  SLF
Sbjct: 84  WVLGPLFCQIYAMLGSLF 101


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 313 YTKEYLKSNGTVI 275
           Y +EYL  NG +I
Sbjct: 415 YIEEYLPGNGVII 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,124
Number of Sequences: 438
Number of extensions: 2467
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)