Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E19
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   5.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.6  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   6.6  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.7  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 456 TGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSSNPCF 337
           T  GLFG       TGG+GF ++      G F  S+ P F
Sbjct: 63  TNGGLFGNRNNTTTTGGTGFGMSSGT---GMFGQSNTPAF 99


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 203 PSIQKLGKIPKLSDVKKDKPSISIEVRKPDEP 298
           PS+     +P++S VKKD P+    +R    P
Sbjct: 476 PSMPFQQNVPQMSSVKKDTPTRDANMRTSKAP 507


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -2

Query: 423 GGNTGGSGFLLNKAARDGGGFTSSSNPCFLN 331
           G N   SGF   K A D    TS + P F N
Sbjct: 364 GANQTSSGFSFGKPATDTTTSTSKTGPLFGN 394


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 410 AAVVFYSTKLHVTVAVLLPLLTHAS*TWNEKFLQFSVLV 294
           +A  F +T   V +AVL+P+L  A    ++  L+ +V++
Sbjct: 240 SATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVII 278


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 322 KSFYSFRFWFIRFSNF 275
           KS+Y +R WF   +NF
Sbjct: 322 KSYYEYRSWFHNVTNF 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,130
Number of Sequences: 5004
Number of extensions: 26169
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)