Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E19
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0224 - 15993497-15994075 36 0.025
01_03_0202 - 13762042-13762572 33 0.13
01_01_0570 - 4231100-4232560 32 0.31
10_08_0226 - 16001958-16002527 31 0.54
07_03_0793 + 21552499-21552729 31 0.71
07_03_0560 + 19479597-19480667 30 0.94
01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899 30 1.2
05_06_0078 - 25412770-25413852 29 2.2
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467 29 2.2
10_08_0223 - 15986763-15987575 29 2.9
07_03_0177 - 14770777-14772045 28 3.8
01_01_0073 + 555485-556315 28 3.8
12_01_0278 - 2016172-2016262,2017057-2017140,2017701-2017837,201... 28 5.0
07_03_0559 + 19475893-19476783 28 5.0
03_05_0688 + 26762668-26762893,26763027-26763101,26763865-267640... 27 6.6
03_01_0320 - 2510907-2512190 27 6.6
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 27 8.8
06_03_1153 - 28047125-28047751 27 8.8
06_03_0265 - 18923597-18924367,18924459-18924704 27 8.8
>10_08_0224 - 15993497-15994075
Length = 192
Score = 35.5 bits (78), Expect = 0.025
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSSNPCFLNLE 325
GGG G G G TVG + GSGF A +G G SS NP + N +
Sbjct: 113 GGGGGGNGGGQGG-GTVGSSGYGSGFGTGSGASEGAGGFSSPNPSYANAD 161
>01_03_0202 - 13762042-13762572
Length = 176
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 453 GDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSS 349
GDG FG GG GG G+ N+ + G G+ SS
Sbjct: 84 GDGFFGPGGGGGGGGGGGWWWNRGSGSGAGWEDSS 118
>01_01_0570 - 4231100-4232560
Length = 486
Score = 31.9 bits (69), Expect = 0.31
Identities = 19/41 (46%), Positives = 23/41 (56%)
Frame = -2
Query: 471 GGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSS 349
GG L G G+ G VGG TGG G N+ A GGG +S +
Sbjct: 377 GGGLGGGGGIGGGLGVGGGTGG-GSGANEGAGMGGGISSGA 416
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/38 (39%), Positives = 16/38 (42%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGF 361
GGG + G G G GG GG G GGGF
Sbjct: 162 GGGGIGAGGGFGGGAGAGGGVGGGGRFGGGGMGGGGGF 199
>10_08_0226 - 16001958-16002527
Length = 189
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSSNP 343
GGG G G++ GG G+G AA DGG +SS P
Sbjct: 110 GGGGGVAGGQAGGVDGSGGYGTGTGSGTGSAAADGGASPTSSPP 153
>07_03_0793 + 21552499-21552729
Length = 76
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 468 GSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGG 364
GSL GD + G T G GGSG L+ + +GGG
Sbjct: 43 GSLARGDDIGGGSTCG---GGSGSLVRRGGNNGGG 74
>07_03_0560 + 19479597-19480667
Length = 356
Score = 30.3 bits (65), Expect = 0.94
Identities = 18/37 (48%), Positives = 18/37 (48%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGG 364
GGG GDG FG GG GG GF A GGG
Sbjct: 62 GGGGGFGGDGGFGGGGGGGLGGGGGFGGGGGAGGGGG 98
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -2
Query: 471 GGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGF 361
GG L G GL G GG GG GF + G GF
Sbjct: 305 GGGLGHGGGLGGGLGHGGGLGGGGFGVGVGVGVGVGF 341
>01_06_1651 + 38909410-38909625,38909713-38910181,38910265-38910899
Length = 439
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGG 367
GGGS TG G G ++ GN GG G K GG
Sbjct: 216 GGGSTSTGGGGGGGDSDDGNEGGGGEGKGKHKHSGG 251
>05_06_0078 - 25412770-25413852
Length = 360
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIET--VGGNTGGSGFLLNKAARDGGG 364
GGG + GDG G T GG+ GG+GF GGG
Sbjct: 232 GGGGISGGDGDGGCITGGGGGDEGGTGFTGFDGITGGGG 270
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGG 367
G GS GDG G + GG+ G GF++ A GG
Sbjct: 59 GDGSREAGDGAGG-DRAGGSGVGGGFVVGAGAASGG 93
>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
Length = 640
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 203 PSIQKLGKIPKLSDVKKDKPSISIEVRKPDEPKP 304
PS+Q++ PK + KK +++ +K EPKP
Sbjct: 110 PSLQRMVASPKKKNKKKKSKKTNLKQKKAAEPKP 143
>10_08_0223 - 15986763-15987575
Length = 270
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 471 GGSLCTGDGLFGIETVGGNT-GGSGFLLNKAARDGGGFTSSS 349
GG+ TGDG G GG + GGSG+ G G + SS
Sbjct: 129 GGNYATGDGEGGGGGGGGGSNGGSGYGAGAGVGQGAGESGSS 170
>07_03_0177 - 14770777-14772045
Length = 422
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNT---GGSGFLLNKAARDGGGF 361
GGG L G GL G +GG GG G K GGGF
Sbjct: 305 GGGGLGGGGGLGGGSGLGGGIGKGGGLGGSFGKGGGLGGGF 345
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -2
Query: 471 GGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGF 361
GG G G+ G GG GG G L GGGF
Sbjct: 342 GGGFGKGGGIGGGFGKGGGLGGGGGLGGGGGGGGGGF 378
Score = 27.1 bits (57), Expect = 8.8
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGF 361
GGG L G GL G GG GG + K GGGF
Sbjct: 229 GGGGLGGGGGLGGGIGKGGGLGGG---IGKGGGLGGGF 263
>01_01_0073 + 555485-556315
Length = 276
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 468 GSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGG 364
G CTGDG G+ V G GG+G +A DGGG
Sbjct: 147 GGCCTGDGFGGV--VAG-VGGTG---TEAGGDGGG 175
>12_01_0278 -
2016172-2016262,2017057-2017140,2017701-2017837,
2017961-2018230,2018306-2018430,2018515-2018646,
2018744-2018821,2019177-2019220,2019803-2019981,
2020168-2020428,2020528-2020655,2020749-2020853,
2020932-2021073
Length = 591
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 282 ENLMNQNRKL*KLFIPSLGSMG*KRK*NRHRHVQLC*VKNHCRRCCLRLFQYQRDHRR 455
EN + +N ++ L +L ++G + N H +V L VK+HC R +++ Y + R+
Sbjct: 390 ENRIAENLRIEVLLPNNLRTVGTVQHYNLHYNVALVSVKDHCVRQPVKIQPYGHNCRK 447
>07_03_0559 + 19475893-19476783
Length = 296
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGF 361
GGG G G G+ GG GG G L +GGGF
Sbjct: 68 GGGGGFRGGGGGGLGGGGGFGGGGGGGLGGGGCEGGGF 105
>03_05_0688 +
26762668-26762893,26763027-26763101,26763865-26764032,
26764983-26765114,26765538-26765677,26765840-26765908,
26766325-26766435,26766854-26766973,26768223-26768324,
26769608-26769778,26769865-26769944,26770119-26770182
Length = 485
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGG 364
GGG G G G++ GG +GG G + + D G
Sbjct: 16 GGGGGGGGGGGGGVDPAGGGSGGGGPGMGRRGSDARG 52
>03_01_0320 - 2510907-2512190
Length = 427
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGG-SGFLL 391
GGG+ C GDG G+ + G+ +GF L
Sbjct: 111 GGGAWCVGDGFCGVARLKGHAKAVTGFAL 139
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGG-GFTSS 352
GGG G G +G GG GG G+ + GG GF+S+
Sbjct: 758 GGGGYGGGGGGYGGGGYGGGGGGGGYGGGSSYGGGGQGFSSA 799
>06_03_1153 - 28047125-28047751
Length = 208
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSSNPC 340
GGG L DG I T GG+ GG+ L + G S + C
Sbjct: 164 GGGGL---DGSSSIGTNGGDIGGNDDLYGGGGNESFGAASDAEAC 205
>06_03_0265 - 18923597-18924367,18924459-18924704
Length = 338
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 248 KKDKPSISIEVRKPDEPKPK-TVKTFHSKFRKHGLEE 355
+KD + SI++ K D P PK ++ F++H L+E
Sbjct: 157 RKDSLTASIDMAKEDLPNPKDSLAELIRMFKEHDLDE 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,706
Number of Sequences: 37544
Number of extensions: 222965
Number of successful extensions: 965
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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