Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E19
(511 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC080610-1|AAH80610.1| 466|Homo sapiens Unknown (protein for IM... 30 4.1
AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha... 30 4.1
AL445543-2|CAI14773.1| 714|Homo sapiens collagen type XXVII alp... 30 4.1
AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alp... 30 4.1
AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alp... 30 4.1
X05421-1|CAA28996.1| 233|Homo sapiens keratin type II protein. 30 5.4
Z97630-1|CAB42829.1| 194|Homo sapiens H1 histone family, member... 29 9.4
X03473-1|CAA27190.1| 194|Homo sapiens protein ( Human gene for ... 29 9.4
CR542220-1|CAG47016.1| 194|Homo sapiens H1F0 protein. 29 9.4
CR456502-1|CAG30388.1| 194|Homo sapiens H1F0 protein. 29 9.4
BC029046-1|AAH29046.1| 194|Homo sapiens H1 histone family, memb... 29 9.4
BC000145-1|AAH00145.1| 194|Homo sapiens H1 histone family, memb... 29 9.4
AJ628418-1|CAF31522.1| 600|Homo sapiens keratin 3 protein. 29 9.4
>BC080610-1|AAH80610.1| 466|Homo sapiens Unknown (protein for
IMAGE:5480483) protein.
Length = 466
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK-PPPSRAAXXXXX 400
KIPK K PS SI K P T KT S F K L + + PP SR
Sbjct: 126 KIPKSLPTKPSAPSTSIVPIKSPHP---TQKTAPSSFTKSALPTQKQVPPTSRPVPARVS 182
Query: 401 XXXXXXXXXXXXXXRPSPVHNEPPP 475
RP P P P
Sbjct: 183 RPTEKPIQRNPGMPRPPPPSTRPLP 207
>AY149237-1|AAN41263.1| 1860|Homo sapiens collagen XXVII proalpha 1
chain precursor protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK-PPPSRAAXXXXX 400
KIPK K PS SI K P T KT S F K L + + PP SR
Sbjct: 363 KIPKSLPTKPSAPSTSIVPIKSPHP---TQKTAPSSFTKSALPTQKQVPPTSRPVPARVS 419
Query: 401 XXXXXXXXXXXXXXRPSPVHNEPPP 475
RP P P P
Sbjct: 420 RPAEKPIQRNPGMPRPPPPSTRPLP 444
>AL445543-2|CAI14773.1| 714|Homo sapiens collagen type XXVII alpha
1 protein.
Length = 714
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK-PPPSRAAXXXXX 400
KIPK K PS SI K P T KT S F K L + + PP SR
Sbjct: 310 KIPKSLPTKPSAPSTSIVPIKSPHP---TQKTAPSSFTKSALPTQKQVPPTSRPVPARVS 366
Query: 401 XXXXXXXXXXXXXXRPSPVHNEPPP 475
RP P P P
Sbjct: 367 RPAEKPIQRNPGMPRPPPPSTRPLP 391
>AL445543-1|CAI14772.1| 1860|Homo sapiens collagen type XXVII alpha
1 protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK-PPPSRAAXXXXX 400
KIPK K PS SI K P T KT S F K L + + PP SR
Sbjct: 363 KIPKSLPTKPSAPSTSIVPIKSPHP---TQKTAPSSFTKSALPTQKQVPPTSRPVPARVS 419
Query: 401 XXXXXXXXXXXXXXRPSPVHNEPPP 475
RP P P P
Sbjct: 420 RPAEKPIQRNPGMPRPPPPSTRPLP 444
>AL356796-1|CAI16857.1| 1860|Homo sapiens collagen type XXVII alpha
1 protein.
Length = 1860
Score = 30.3 bits (65), Expect = 4.1
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK-PPPSRAAXXXXX 400
KIPK K PS SI K P T KT S F K L + + PP SR
Sbjct: 363 KIPKSLPTKPSAPSTSIVPIKSPHP---TQKTAPSSFTKSALPTQKQVPPTSRPVPARVS 419
Query: 401 XXXXXXXXXXXXXXRPSPVHNEPPP 475
RP P P P
Sbjct: 420 RPAEKPIQRNPGMPRPPPPSTRPLP 444
>X05421-1|CAA28996.1| 233|Homo sapiens keratin type II protein.
Length = 233
Score = 29.9 bits (64), Expect = 5.4
Identities = 23/46 (50%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAAR---DGGGFTSSSN 346
GGG + G G FG T G +GGSGF AR GGGF+S+SN
Sbjct: 173 GGGGI--GGG-FGGGT-SGFSGGSGFGSISGARYGVSGGGFSSASN 214
>Z97630-1|CAB42829.1| 194|Homo sapiens H1 histone family, member 0
protein.
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>X03473-1|CAA27190.1| 194|Homo sapiens protein ( Human gene for
histone H1(0). ).
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>CR542220-1|CAG47016.1| 194|Homo sapiens H1F0 protein.
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>CR456502-1|CAG30388.1| 194|Homo sapiens H1F0 protein.
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>BC029046-1|AAH29046.1| 194|Homo sapiens H1 histone family, member
0 protein.
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>BC000145-1|AAH00145.1| 194|Homo sapiens H1 histone family, member
0 protein.
Length = 194
Score = 29.1 bits (62), Expect = 9.4
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRAA 385
K PK + VKK K ++ +K KPKTVK K K + VKP +A
Sbjct: 136 KKPKATPVKKAKKKLAATPKK--AKKPKTVKAKPVKASKPKKAKPVKPKAKSSA 187
>AJ628418-1|CAF31522.1| 600|Homo sapiens keratin 3 protein.
Length = 600
Score = 29.1 bits (62), Expect = 9.4
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAAR---DGGGFTSSSN 346
GGG + G G G + G +GGSGF AR GGGF+S+SN
Sbjct: 540 GGGGI--GGGFGGGSS--GFSGGSGFGSISGARYGVSGGGFSSASN 581
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,643,922
Number of Sequences: 237096
Number of extensions: 1047226
Number of successful extensions: 2775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2733
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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