Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E19
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.49
U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical pr... 31 0.49
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 31 0.49
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 1.5
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 1.5
AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like pro... 29 2.6
AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1 re... 29 2.6
AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical... 28 3.4
AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical ... 28 3.4
U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical p... 28 4.5
U40029-10|AAN65326.1| 644|Caenorhabditis elegans Hypothetical p... 28 4.5
U40029-9|AAN65325.1| 727|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 27 6.0
U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 27 6.0
Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 27 7.9
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ... 27 7.9
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ... 27 7.9
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.1 bits (67), Expect = 0.49
Identities = 23/44 (52%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARD--GGGFTSSS 349
GGG+ TG FG GGNTGGSGF KA GGG T S
Sbjct: 45 GGGN--TGGSGFG----GGNTGGSGFGGGKAGGSGFGGGNTCGS 82
>U56963-8|AAB38121.1| 155|Caenorhabditis elegans Hypothetical
protein T13A10.1 protein.
Length = 155
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 224 KIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRK-HGLEEEVKP 367
K K + KK+K + EV++PD PK + KT K K + VKP
Sbjct: 63 KPEKEEEPKKEKSKMKSEVKEPDAPKKENDKTSEDKKEKQEDTFDAVKP 111
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 206 SIQKLGKIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSR 379
SIQK+ ++ K +KK++ +E E +PK + H K ++G + KP P R
Sbjct: 487 SIQKIREMEKNDVIKKEEDD-RLEQLLKKEKEPKKLNNEHRKLFENGNVAQKKPEPRR 543
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARD--GGGFTSSS 349
GGG+ TG FG GGNTGGSGF K GGG T S
Sbjct: 45 GGGN--TGGSGFG----GGNTGGSGFGGGKTGGSGFGGGNTCGS 82
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARD--GGGFTSSS 349
GGG+ TG FG GGNTGGSGF K GGG T S
Sbjct: 45 GGGN--TGGSGFG----GGNTGGSGFGGGKTGGSGFGGGNTCGS 82
>AF117337-1|AAD22029.1| 277|Caenorhabditis elegans Hus1-like
protein protein.
Length = 277
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 233 KLSDVKKDKPSISIEVRKPD 292
KLS +KD+P +S+EVR P+
Sbjct: 107 KLSKSQKDEPMLSVEVRNPE 126
>AF106587-2|AAC78225.1| 277|Caenorhabditis elegans Human hus1
related protein 1 protein.
Length = 277
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 233 KLSDVKKDKPSISIEVRKPD 292
KLS +KD+P +S+EVR P+
Sbjct: 107 KLSKSQKDEPMLSVEVRNPE 126
>AF078790-10|AAC26931.1| 197|Caenorhabditis elegans Hypothetical
protein F36H12.5 protein.
Length = 197
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 248 KKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKP 367
KK+K + EV++PD PK + K ++ + VKP
Sbjct: 71 KKEKSKMKSEVKEPDAPKKDDKTSDEKKEKQEDTFDAVKP 110
>AF025457-4|AAB70966.1| 385|Caenorhabditis elegans Hypothetical
protein C08E3.6 protein.
Length = 385
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 319 SFYSFRFWFIRFSN 278
S+Y F FWF RF+N
Sbjct: 43 SYYEFEFWFYRFNN 56
>U88169-12|AAB42231.1| 419|Caenorhabditis elegans Hypothetical
protein T03F1.1 protein.
Length = 419
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 221 GKIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSR 379
G + +L +VKKD P S KP +PK+ + K K E P SR
Sbjct: 15 GALNRLGNVKKDHPLESSSNSKPTH-QPKSPAPYRQKIEKLSAEVVDSNPYSR 66
>U40029-10|AAN65326.1| 644|Caenorhabditis elegans Hypothetical
protein F10G7.9b protein.
Length = 644
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 203 PSIQKLGKIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRA 382
P IQ + P + + +S+EV PDEP+P F + LE V P +
Sbjct: 97 PIIQPISPTPLPASFHDNYDEVSMEVVSPDEPQPSPNDPFIKPPIQIPLEAVVSLPSTSK 156
Query: 383 A 385
A
Sbjct: 157 A 157
>U40029-9|AAN65325.1| 727|Caenorhabditis elegans Hypothetical
protein F10G7.9a protein.
Length = 727
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 203 PSIQKLGKIPKLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPPSRA 382
P IQ + P + + +S+EV PDEP+P F + LE V P +
Sbjct: 180 PIIQPISPTPLPASFHDNYDEVSMEVVSPDEPQPSPNDPFIKPPIQIPLEAVVSLPSTSK 239
Query: 383 A 385
A
Sbjct: 240 A 240
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 272 IEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK 364
IEV DEP P+ V F KF K LE ++K
Sbjct: 954 IEVSLADEPSPEHVAAFRRKFDK--LEADMK 982
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical protein
R31.1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 272 IEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK 364
IEV DEP P+ V F KF K LE ++K
Sbjct: 954 IEVSLADEPSPEHVAAFRRKFDK--LEADMK 982
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 233 KLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVKPPP 373
K D+ D+ IEV K K K V F F + + +KP P
Sbjct: 51 KTRDIGSDEEREEIEVLKQSVKKAKVVHGFKQTFAEVDAPKVIKPEP 97
>U70856-1|AAB09165.1| 327|Caenorhabditis elegans Hypothetical
protein F57F4.2 protein.
Length = 327
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 456 TGDGLFGIETVGGNTGGSGF-LLNKAARDGGGF 361
TG G F + GG+ G+G+ L K D GG+
Sbjct: 52 TGPGKFYVAKNGGDDDGTGYQKLKKGGEDDGGY 84
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 272 IEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK 364
IEV DEP P+ V F KF K LE ++K
Sbjct: 954 IEVSLADEPSPEHVAAFRRKFDK--LEADMK 982
>Z93389-5|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 233 KLSDVKKDKPSISIEVRKPDEPKPKTVKTFHSKFRKHGLEEEVK 364
K + + KP + E K DEPK + K K ++ EEE K
Sbjct: 69 KKEEKVEKKPEENKEAEKKDEPKKEEEKKEEEKKKEEKKEEEKK 112
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -2
Query: 471 GGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSSNPCFL 334
GG+L GL + +GG G S F L + G +++ P FL
Sbjct: 120 GGALAIYAGLTYPQKLGGIVGLSSFFLQRTKFPGSFTANNATPIFL 165
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSS 349
GGG C G G G GG++GG G+ + + G G SS
Sbjct: 158 GGGGGCGGGGGGGCG--GGSSGGGGYAVAPSGGGGCGGGGSS 197
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 474 GGGSLCTGDGLFGIETVGGNTGGSGFLLNKAARDGGGFTSSS 349
GGG C G G G GG++GG G+ + + G G SS
Sbjct: 158 GGGGGCGGGGGGGCG--GGSSGGGGYAVAPSGGGGCGGGGSS 197
>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
protein Y38E10A.6b protein.
Length = 1345
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 281 RKPDEPKPKTVKTFHSKFRKHGLEEEVKP 367
+K + P+P +K F K ++ G+E EV P
Sbjct: 318 KKLNRPRPFVLKWFWKKRKRLGIEREVPP 346
>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
protein Y38E10A.6a protein.
Length = 1343
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 281 RKPDEPKPKTVKTFHSKFRKHGLEEEVKP 367
+K + P+P +K F K ++ G+E EV P
Sbjct: 316 KKLNRPRPFVLKWFWKKRKRLGIEREVPP 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,123,978
Number of Sequences: 27780
Number of extensions: 163985
Number of successful extensions: 762
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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