Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E18
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 344 5e-96
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 168 5e-43
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 164 1e-41
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 113 1e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 30 0.23
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.93
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 28 0.93
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 1.6
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 3.7
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 26 3.7
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 4.9
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 6.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 8.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 344 bits (846), Expect = 5e-96
Identities = 153/200 (76%), Positives = 180/200 (90%)
Frame = +3
Query: 12 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRA 191
DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFF+ GFAPL + GS ++A
Sbjct: 224 DLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQA 283
Query: 192 LTVPELTQQMFDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVE 371
++VPELTQQMFDA NMM A DPRHGRYLTVA +FRG++SMKEVDEQ+ ++Q KNS+YFVE
Sbjct: 284 VSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVE 343
Query: 372 WIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 551
WIP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGM
Sbjct: 344 WIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGM 403
Query: 552 DEMEFTEAESNMNDLISEYQ 611
DEMEFTEAESNMNDL+SEYQ
Sbjct: 404 DEMEFTEAESNMNDLVSEYQ 423
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 168 bits (409), Expect = 5e-43
Identities = 75/208 (36%), Positives = 122/208 (58%), Gaps = 8/208 (3%)
Frame = +3
Query: 12 DLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRA 191
+LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + +
Sbjct: 226 NLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHES 285
Query: 192 LTVPELTQQMFDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVE 371
+V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+
Sbjct: 286 NSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVD 345
Query: 372 WIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFL 527
W P K +CD PP+ ++ A + N+T+I E + R+ +F M+ ++AF+
Sbjct: 346 WCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFV 405
Query: 528 HWYTGEGMDEMEFTEAESNMNDLISEYQ 611
HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALERDYE 433
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 164 bits (398), Expect = 1e-41
Identities = 73/211 (34%), Positives = 123/211 (58%), Gaps = 8/211 (3%)
Frame = +3
Query: 3 TRGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQ 182
T +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 227 TYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAF 286
Query: 183 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSY 362
+ + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I+++ +
Sbjct: 287 HESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQ 346
Query: 363 FVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTAMFRRK 518
FV+W P K +C PP+ + A + N+T+I E + R+ +F M+ ++
Sbjct: 347 FVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKR 406
Query: 519 AFLHWYTGEGMDEMEFTEAESNMNDLISEYQ 611
AF+HWY GEGM+E EF+EA ++ L +Y+
Sbjct: 407 AFVHWYVGEGMEEGEFSEAREDLAALERDYE 437
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 113 bits (273), Expect = 1e-26
Identities = 60/208 (28%), Positives = 116/208 (55%), Gaps = 10/208 (4%)
Frame = +3
Query: 18 NHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFISGFAPLTSRGSQQYRAL- 194
N LVS MS TT LR+PG +N DL + +++P PR HF ++ + P T++ ++ +A+
Sbjct: 229 NQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIR 288
Query: 195 --TVPELTQQMFDAKNMMAACDP-RHGRYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYF 365
TV ++ +++ KN M + +P + ++++ I +G +V + ++ I+ + + F
Sbjct: 289 KTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASF 348
Query: 366 VEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 536
+ W P +++ A+ P +++ + N T+I LFKR +Q+ + +R AFL Y
Sbjct: 349 IPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQY 408
Query: 537 TGEGMDEMEFTEAESNMN---DLISEYQ 611
E + E + E +S+ + DLI+EY+
Sbjct: 409 KKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 494 VHRYVQTQGFLALVHRRGYGRNGVHGSGEQHER 592
V R L+ + +RGY N +HG +QH+R
Sbjct: 675 VDRQESADALLSDLMKRGYTSNSIHGGKDQHDR 707
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 450 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 557
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 288 IFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 461
++ + ++ + + +MNI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 462 IQELFK 479
+EL++
Sbjct: 403 KEELYE 408
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 437 DLHRQLDRHPGAV*AHLGTVHRYVQTQGFLALVH 538
DLH+Q ++H G V LG H ++ +G VH
Sbjct: 119 DLHKQAEKHGGRVVRLLGN-HEFMNAKGDWRYVH 151
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 155 SETRNKKVQTWEWHHVHSQLAEI 87
++ NK VQT EWH S++A+I
Sbjct: 1186 AKAANKIVQTHEWHPEGSRVAQI 1208
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 560 HFVHTLAGVPVQESLASEHSGELFRDALKQ 471
HF TL G P + SLASE + D+L Q
Sbjct: 149 HFHGTLQGNPTEPSLASEQMHDSDADSLFQ 178
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 137 KVQTWEWHHVHSQLAEIRIQLT 72
K+Q E HH +S+ A +R+QL+
Sbjct: 94 KLQDSEIHHRYSEFASLRVQLS 115
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 267 RYLTVATIFRGRMSMKEVDEQMMNIQNKNSSYFVEWIPN 383
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 327 QMMNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 449
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,956
Number of Sequences: 5004
Number of extensions: 42044
Number of successful extensions: 141
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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