Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E17
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   185   2e-48
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   185   3e-48
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   4.2  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   5.5  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.5  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   7.3  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.3  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    24   9.6  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    24   9.6  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  185 bits (451), Expect = 2e-48
 Identities = 88/131 (67%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
 Frame = +3

Query: 12  LSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILP 191
           LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K V  R + 
Sbjct: 27  LSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYME 86

Query: 192 KRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA-E 368
           KR+N+RIEHVKHSKCRQDFL RVK NE   KEAKA GK V L+RQPAPP  AH VS    
Sbjct: 87  KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENN 146

Query: 369 KPVLLAPIPYE 401
           +PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  185 bits (450), Expect = 3e-48
 Identities = 88/131 (67%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
 Frame = +3

Query: 12  LSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRILP 191
           LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV++ K V  R + 
Sbjct: 27  LSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYME 86

Query: 192 KRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA-E 368
           KR+N+RIEHVKHSKCRQDFL RVK NE   KEAKA GK V L+RQPAPP  AH VS    
Sbjct: 87  KRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENN 146

Query: 369 KPVLLAPIPYE 401
           +PV L P+ Y+
Sbjct: 147 EPVTLHPVAYD 157


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 146 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 283
           +R+ R +   R+ PT  +  P  +   + V   LPQ+   ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 284  LQQPFVLLDALEEVLPALGVLHVL 213
            L+ PF+LL  + E+LP   +  VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 183 ILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 305
           IL K +NI++EH+  S   Q  L   +E+     EA   GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 77  TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 256
           TK    +SIP    +  Q  R  S   ++ +  +Q  +  HQ P   ++++Q     P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825

Query: 257 RQGERKAV 280
           ++   K V
Sbjct: 826 KEVSEKPV 833


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 EAKAAGKVVNLKRQPAPPKAAH 350
           + KA  K+ +  +QP+PP A H
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEH 365


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 252 KRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKP 374
           K +++ ER+ K      +  NL+R   PPK     + +E P
Sbjct: 83  KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
 Frame = +3

Query: 33  YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 185
           Y VGD VD+  NG V   M  ++      +   TG+V    N   + L ++  +R  G  
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717

Query: 186 LPKRINIR----IEHVKHSKCR-QDFLKRVKEN 269
            P  +N++    ++ ++  + +  DFLK  K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 117 GRVYNVTAHALGVIVN 164
           G+ YN+T+H  G  VN
Sbjct: 234 GKTYNITSHVSGFYVN 249


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 371 FLGAAYNMRSLWRCRLSLQVNYFAGGFSFLQQPFVL 264
           F   +Y  +++    +S    YFAGG ++L  P+ +
Sbjct: 267 FCDPSYGQKAIAAKPISAMKGYFAGGLAWLIVPWAM 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,533
Number of Sequences: 5004
Number of extensions: 30227
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)