Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E16
(546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 28 1.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 27 1.4
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 26 3.2
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 26 4.2
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S... 26 4.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 7.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.6
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 25 9.6
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 25 9.6
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 25 9.6
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.0
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +1
Query: 292 VRLVELINFYAKMIYARWR---EPNVLKWFLGNLNHLIDTFSPE----MEATVIQNS 441
++L I FY +MI W + VL W LGN++++ P+ ATV NS
Sbjct: 566 MKLPPRIMFYTQMIATIWSCFVQIGVLDWALGNIDNVCQADQPDNYTCPNATVFFNS 622
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 370 FLGNLNHLIDTFSPEMEATVIQNSKEQSYLSYTWP 474
F G LN+L+DTF+ + + N+ +S + T+P
Sbjct: 413 FQGCLNYLVDTFTKFAASAIAANTFTRSIFAGTFP 447
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 541 ERPHQRSDQTWL*LQSYDEPPQPAKYKTNNFAPWNFE 431
E+P Q S + L D P PA+ +TN AP FE
Sbjct: 268 EQPKQES--AMIDLLGLDNEPSPAQPQTNTSAPLAFE 302
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 401 HFHPKWRLQ*FKIPRSKVICLIL 469
HF KWR F +S + CL+L
Sbjct: 153 HFLKKWRNMFFTFCKSPIFCLVL 175
>SPBC336.05c |||S-adenosylmethionine-
dependentmethyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 351 FTPSCVYHFCIEVYKFYQSHTDIFSGQLVK 262
F PS Y FC ++ F+QS + S +K
Sbjct: 221 FRPSSTYGFCTQIAVFHQSKNNAASHCFLK 250
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 319 YAKMIYARWREPNV-LKWFLGNLNHLIDTFSPEMEATVIQNSKEQSYLS 462
Y + + W + ++ L W + NL+H + S VI +SK Y+S
Sbjct: 483 YTESVSFLWLDSSLWLDWIVENLDHTVYVDSITPPVFVIDHSKGVIYVS 531
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 145 MSEVDTLLQETILDCPYVAKAILKLLPGVPKERIEKH 255
+S+ T++ + + D PY+ + I + V K +E H
Sbjct: 572 ISKTATIVSDNLKDDPYIFRPIAHMSESVFKVAVEPH 608
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 373 LGNLNHLIDTFSPEMEATVIQNSKEQSY 456
+GNL H +DT P+ + +++ K Y
Sbjct: 57 IGNLQHHLDTVLPKKKFQFLRDPKTNDY 84
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 540 NGPIRDQIRHGFNYSHMTNHLSR 472
NGPI + G SH T H SR
Sbjct: 156 NGPIDQLLEEGAAPSHYTGHRSR 178
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 205 PSLHMDNQVLSPAEVCPPHSCPLSFYKQCGILPMHMNT 92
P L + S + P S L+ Y Q GILP ++N+
Sbjct: 141 PKLLFADSAPSSSSDNPTSSVDLNDYSQIGILPPNLNS 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,465
Number of Sequences: 5004
Number of extensions: 56163
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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