Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E16
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0703 - 5785599-5785607,5785954-5786008,5786572-5786627,578...    29   3.2  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    27   7.4  
03_05_0415 - 24019330-24019539,24020948-24021099,24021765-240218...    27   9.8  

>11_01_0703 -
           5785599-5785607,5785954-5786008,5786572-5786627,
           5786750-5786923,5787509-5787694,5787892-5788048,
           5788144-5788372,5788909-5789167,5789453-5789554
          Length = 408

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 184 DCPYVAKAILKLLPGVPKERIEKHILFNQLATENIGVRLVELI 312
           D     K ++  +P +P+E IE+  + N+L   ++GV ++E+I
Sbjct: 185 DKTMTTKTLVGTIPYLPREYIERKEISNKLDIFSLGVVMLEII 227


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 262  TKCASRCAPSVLQAITLKLPSLHMDNQVLSPAEVCPPHSCPLSFYKQ 122
            T C   CA   +  + L    L       SP+ + PPHSC   + +Q
Sbjct: 1523 TLCGKECA--AISGVMLLDKQLVDGQSQASPSMLLPPHSCTADYCRQ 1567


>03_05_0415 -
           24019330-24019539,24020948-24021099,24021765-24021846,
           24021930-24022068,24022775-24023127
          Length = 311

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 308 SSTSLTPIFSVANWLNKMCFSMRSFGTPGNNFKI 207
           SST+ TP  +   W  ++C S+R  GT G   ++
Sbjct: 60  SSTTTTPRPTEIPWSRELCNSVRLIGTVGTEVEL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,432
Number of Sequences: 37544
Number of extensions: 357025
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)