Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E16
(546 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ321703-1|ABC55265.1| 676|Homo sapiens NULP1 protein. 42 0.002
BC011884-1|AAH11884.1| 676|Homo sapiens transcription factor 25... 42 0.002
BC009349-1|AAH09349.1| 676|Homo sapiens transcription factor 25... 42 0.002
BC000959-1|AAH00959.1| 676|Homo sapiens transcription factor 25... 42 0.002
AB028972-1|BAA83001.1| 550|Homo sapiens KIAA1049 protein protein. 42 0.002
BC127709-1|AAI27710.1| 166|Homo sapiens LDLRAD1 protein protein. 33 0.65
BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein... 33 0.65
AL353898-2|CAI22662.1| 116|Homo sapiens low density lipoprotein... 33 0.65
AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein... 33 0.65
S65761-1|AAB28159.1| 458|Homo sapiens anti-colorectal carcinoma... 32 1.5
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 31 2.0
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto... 30 6.1
>DQ321703-1|ABC55265.1| 676|Homo sapiens NULP1 protein.
Length = 676
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Frame = +1
Query: 52 RGKEKLPEFIVSLKYSYALARFHIAY---KKKGDMSEVDTLLQETILDCPYVAKAILKLL 222
R +LP F S+ +Y L ++ + L+Q+ + P V +L+
Sbjct: 410 RNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESC 469
Query: 223 PGVPKERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHL--- 393
P + H F A + L +L+N Y + W+EP + W N++ +
Sbjct: 470 SVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQA 529
Query: 394 IDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLISDGAVPP 546
+D P +EA +N ++ Y P + RH+ ++ + + ++ A+PP
Sbjct: 530 VDAGDPAVEA--CENRRKVLY--QRAPRNIHRHV-ILSEIKEAVA--ALPP 573
>BC011884-1|AAH11884.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Frame = +1
Query: 52 RGKEKLPEFIVSLKYSYALARFHIAY---KKKGDMSEVDTLLQETILDCPYVAKAILKLL 222
R +LP F S+ +Y L ++ + L+Q+ + P V +L+
Sbjct: 410 RNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESC 469
Query: 223 PGVPKERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHL--- 393
P + H F A + L +L+N Y + W+EP + W N++ +
Sbjct: 470 SVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQA 529
Query: 394 IDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLISDGAVPP 546
+D P +EA +N ++ Y P + RH+ ++ + + ++ A+PP
Sbjct: 530 VDAGDPAVEA--CENRRKVLY--QRAPRNIHRHV-ILSEIKEAVA--ALPP 573
>BC009349-1|AAH09349.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Frame = +1
Query: 52 RGKEKLPEFIVSLKYSYALARFHIAY---KKKGDMSEVDTLLQETILDCPYVAKAILKLL 222
R +LP F S+ +Y L ++ + L+Q+ + P V +L+
Sbjct: 410 RNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESC 469
Query: 223 PGVPKERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHL--- 393
P + H F A + L +L+N Y + W+EP + W N++ +
Sbjct: 470 SVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQA 529
Query: 394 IDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLISDGAVPP 546
+D P +EA +N ++ Y P + RH+ ++ + + ++ A+PP
Sbjct: 530 VDAGDPAVEA--CENRRKVLY--QRAPRNIHRHV-ILSEIKEAVA--ALPP 573
>BC000959-1|AAH00959.1| 676|Homo sapiens transcription factor 25
(basic helix-loop-helix) protein.
Length = 676
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Frame = +1
Query: 52 RGKEKLPEFIVSLKYSYALARFHIAY---KKKGDMSEVDTLLQETILDCPYVAKAILKLL 222
R +LP F S+ +Y L ++ + L+Q+ + P V +L+
Sbjct: 410 RNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESC 469
Query: 223 PGVPKERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHL--- 393
P + H F A + L +L+N Y + W+EP + W N++ +
Sbjct: 470 SVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQA 529
Query: 394 IDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLISDGAVPP 546
+D P +EA +N ++ Y P + RH+ ++ + + ++ A+PP
Sbjct: 530 VDAGDPAVEA--CENRRKVLY--QRAPRNIHRHV-ILSEIKEAVA--ALPP 573
>AB028972-1|BAA83001.1| 550|Homo sapiens KIAA1049 protein protein.
Length = 550
Score = 41.5 bits (93), Expect = 0.002
Identities = 37/171 (21%), Positives = 72/171 (42%), Gaps = 6/171 (3%)
Frame = +1
Query: 52 RGKEKLPEFIVSLKYSYALARFHIAY---KKKGDMSEVDTLLQETILDCPYVAKAILKLL 222
R +LP F S+ +Y L ++ + L+Q+ + P V +L+
Sbjct: 284 RNLSQLPNFAFSVPLAYFLLSQQTDLPECEQSSARQKASLLIQQALTMFPGVLLPLLESC 343
Query: 223 PGVPKERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHL--- 393
P + H F A + L +L+N Y + W+EP + W N++ +
Sbjct: 344 SVRPDASVSSHRFFGPNAEISQPPALSQLVNLYLGRSHFLWKEPATMSWLEENVHEVLQA 403
Query: 394 IDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLISDGAVPP 546
+D P +EA +N ++ Y P + RH+ ++ + + ++ A+PP
Sbjct: 404 VDAGDPAVEA--CENRRKVLY--QRAPRNIHRHV-ILSEIKEAVA--ALPP 447
>BC127709-1|AAI27710.1| 166|Homo sapiens LDLRAD1 protein protein.
Length = 166
Score = 33.1 bits (72), Expect = 0.65
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 178 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 98
LSP VCPP CP +F+K C +P H+
Sbjct: 115 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 146
>BC127708-1|AAI27709.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.65
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 178 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 98
LSP VCPP CP +F+K C +P H+
Sbjct: 154 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 185
>AL353898-2|CAI22662.1| 116|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 116
Score = 33.1 bits (72), Expect = 0.65
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 178 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 98
LSP VCPP CP +F+K C +P H+
Sbjct: 65 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 96
>AL353898-1|CAI22661.1| 205|Homo sapiens low density lipoprotein
receptor class A domain containing 1 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.65
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Frame = -3
Query: 178 LSPAEVCPPHS-----CPLSFYKQCGILPMHM 98
LSP VCPP CP +F+K C +P H+
Sbjct: 154 LSPVTVCPPCGPGWWRCPSTFFKYCDCIPRHL 185
>S65761-1|AAB28159.1| 458|Homo sapiens anti-colorectal carcinoma
heavy chain protein.
Length = 458
Score = 31.9 bits (69), Expect = 1.5
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 349 EPNVLKWFLGNLNHLIDTFSPEMEATVIQNSKEQSYLSYTWPAEVVRHMTVIKAMSDLIS 528
EP + W G+L+ + TF +++ + S + S TWP+E V A S +
Sbjct: 169 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVD 228
Query: 529 DGAVP 543
VP
Sbjct: 229 KKIVP 233
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 223 AITLKLPSLHMDNQVLSP---AEVCPPHSCPLSFY 128
+I LKLPSL+ D V P A CP H P+ +
Sbjct: 2334 SIPLKLPSLNKDGSVSEPDMAANFCPDHKAPMVLF 2368
>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
protein.
Length = 4866
Score = 29.9 bits (64), Expect = 6.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 223 AITLKLPSLHMDNQVLSP---AEVCPPHSCPLSFY 128
+I LKLPSL+ D V P CP H P+ +
Sbjct: 2335 SIPLKLPSLNKDGSVSEPDMAGNFCPDHKAPMVLF 2369
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,025,017
Number of Sequences: 237096
Number of extensions: 1981552
Number of successful extensions: 3491
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3487
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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