Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E16
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    29   2.2  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    27   6.7  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    27   6.7  
AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine re...    27   6.7  
Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   8.8  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   8.8  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 281  SVANWLNKMCFSMRSFGTPGNNFKIAFATYGQ 186
            +V N+LN    ++ +F + GN+ K+A  TYG+
Sbjct: 1719 NVQNFLNSFITNVGNFTSTGNDTKMAVVTYGR 1750


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +1

Query: 238 ERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHLIDTFSPEM 417
           E ++ H+L     T N+   ++  I + A ++    R  N    F  NLN     +   +
Sbjct: 717 ENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLL 776

Query: 418 EATVIQNSKEQSY 456
             T +QN+ E+ +
Sbjct: 777 TGTPLQNNLEELF 789


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +1

Query: 238 ERIEKHILFNQLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHLIDTFSPEM 417
           E ++ H+L     T N+   ++  I + A ++    R  N    F  NLN     +   +
Sbjct: 717 ENMKFHVLLTSYETINMDKTILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLL 776

Query: 418 EATVIQNSKEQSY 456
             T +QN+ E+ +
Sbjct: 777 TGTPLQNNLEELF 789


>AC006677-1|AAF39948.1|  331|Caenorhabditis elegans Serpentine
           receptor, class x protein26 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +1

Query: 268 QLATENIGVRLVELINFYAKMIYARWREPNVLKWFLGNLNHLIDTFSPEMEATVIQNSKE 447
           QLA  +  V     I    + IY    E + L  FL +LN     + P   A +   SK 
Sbjct: 65  QLAPSSFLVDNSHFIGVVGEFIY----EISNLSHFLISLNRFCAVYLPYYYAPIFCVSKT 120

Query: 448 QSYLSYTWPAEVV 486
           + YL++ W   ++
Sbjct: 121 KLYLTFVWLVSII 133


>Z49913-1|CAA90142.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK938.2 protein.
          Length = 340

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 196 HMDNQVLSPAEVCPPHSCPLSFYKQ 122
           H  NQ L+P      HSCPLS Y Q
Sbjct: 212 HSRNQ-LTPCRKFDSHSCPLSVYHQ 235


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 538 RPHQRSDQTWL*LQSYDEPPQPAKYKTNNFAPW 440
           RP QR   TW  +     P QP    T+  APW
Sbjct: 142 RPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPW 174


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 538 RPHQRSDQTWL*LQSYDEPPQPAKYKTNNFAPW 440
           RP QR   TW  +     P QP    T+  APW
Sbjct: 138 RPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPW 170


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 538 RPHQRSDQTWL*LQSYDEPPQPAKYKTNNFAPW 440
           RP QR   TW  +     P QP    T+  APW
Sbjct: 81  RPTQRLPLTWSTVTPTAAPSQPIPTATSRKAPW 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,495
Number of Sequences: 27780
Number of extensions: 313744
Number of successful extensions: 749
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)