Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E15
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
 Frame = +3

Query: 225  RRRP---LAQDSGEPGQGRVPDSEGGCVGRLQPER 320
            RR P   LAQDS E    R P + GG     +PER
Sbjct: 1337 RRTPVPRLAQDSSEDESYRGPSASGGRPVPERPER 1371



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 330 QGTSRGSHQLRSHTALLQSTQLQRH 404
           Q T +  H L++H   LQST +Q H
Sbjct: 135 QETLQRHHHLQNHHHHLQSTAVQDH 159


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 483 HHRGVRGNR 509
           HHRGVRG R
Sbjct: 300 HHRGVRGTR 308


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 488 MMLATWSAFSPAIFSMLLNPSNTTLMTCVSLQLSRL 381
           ++L+ W  +   ++  LL+P+ T        QL++L
Sbjct: 66  VLLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKL 101



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 139 EITRLGSVTKHHSSKRPES 83
           E+T   SV  HH + RP +
Sbjct: 111 ELTNRKSVVFHHDNARPHT 129


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 518 SIWSIPPHSSMMLAT 474
           ++WS+ PH +  L+T
Sbjct: 99  ALWSLVPHMAWQLST 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,320
Number of Sequences: 438
Number of extensions: 3710
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)