Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E14
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.5  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    26   4.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.0  

>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 85  LHIKCSIFLSVISKNTNLYKHHYGGM 162
           ++  CS+F  +I  NTN  K  +GG+
Sbjct: 525 IYFACSLFKEIIEANTNRVKFVHGGV 550


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +1

Query: 91  IKCS--IFLSVISKNTNLYKHHYGGMTSVLDCAHKATDNFCRLPYHVRGPVRESVTTSTL 264
           IKC   +FL  ++    L++H  G +   L   HK  D F ++    RG ++  ++ + +
Sbjct: 56  IKCEDRLFLYTLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVD-RGAIKFLLSGANI 114

Query: 265 CVTNCIS 285
            +   +S
Sbjct: 115 MIPGLVS 121


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 204  LSPAVPCTRSGSRVCHDFNIMCN*LYKFFFCILDGFKCIIENK*LCMSEIILES*IDIQR 383
            + P+    +S SR C  F   C  +     C+L  F  I      C+ ++     ID+ R
Sbjct: 1264 VGPSYAFHKSASRTCQTFGFWCVTVLTIALCLLPRFSYI------CLQKLFYPRDIDLLR 1317

Query: 384  K 386
            +
Sbjct: 1318 R 1318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,536
Number of Sequences: 5004
Number of extensions: 48068
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)