Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E14
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    29   1.8  
U29378-5|AAA68725.2|  355|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = -1

Query: 332 FIFYNTFETI*YTKKKLIQLVTHNVEVVTDSRTGPRTWYGRRQKLSVALWAQSSTDVMPP 153
           +IF+  F  + +TK+    L  H VE + ++  G +     + +L  AL      DV+  
Sbjct: 395 WIFWQEFLDVVHTKRTWKSLSQHFVENLMENIMGTKYDLKAKMELYYALRCPIDEDVLKK 454

Query: 152 **CLYKLVFLLIT-DRKMLHFICKNFY 75
                ++  ++IT +R M H + KNF+
Sbjct: 455 ---FQEIATVVITNNRVMAHAVGKNFF 478


>U29378-5|AAA68725.2|  355|Caenorhabditis elegans Hypothetical
           protein F08C6.6 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 470 FSTALWFHFDILHRKVSRANHHINHNNLFSL 378
           F TA+ F+      K S    HINH NL+S+
Sbjct: 17  FVTAIAFYSGTQFNKSSEQEEHINHANLYSV 47


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 46  VSSFVATVRL*KFLHIKCSIFLSVISKNTNLYKHHYGGMTSVLDCAHKATDNF-CRLPYH 222
           +SSF A++ +  F+   CSIF+   S+      ++      ++  A  +++N+     ++
Sbjct: 204 ISSFAASISVSYFIQSNCSIFIQ-SSRMQYFIIYNRCISQEIVQEAFGSSNNWEPNQVWY 262

Query: 223 VRGPVRESVTTSTLCVTNCISFF 291
            R P    + T   CV + I FF
Sbjct: 263 FRIPEASKILTIMFCVNSHIQFF 285


>Z75553-4|CAA99946.1|  389|Caenorhabditis elegans Hypothetical
           protein ZC443.4 protein.
          Length = 389

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 226 VHGTAGDRSCQLLCGHS 176
           +HG  G R  ++LCGH+
Sbjct: 106 IHGVYGSRGIEILCGHN 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,797
Number of Sequences: 27780
Number of extensions: 272309
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)