Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E13
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   1.8  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    24   9.8  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 70  SVPLRINKHIIK*ITLLLSFITDKYINNQMLFIYLFILTWN 192
           S P+R  K  I+ I +L S   DK ++N +  +YL I + N
Sbjct: 536 SDPMRFMKEAIRNIEILNSQGKDKELSNILKIVYLGIFSQN 576


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 96   YNKVNNIITKFHYRQVYK*SNVIYLFIYINLEWS-PFEKAYFLLTCYNIVSST 251
            YN+V  ++  F Y+ V     + +  IY N + +  F+  Y +L  +N++ S+
Sbjct: 1063 YNRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANYLFDYTYVML--FNLIFSS 1113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,360
Number of Sequences: 5004
Number of extensions: 27372
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)