Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E13
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-10|CAA82375.2|  182|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    28   3.7  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z29117-10|CAA82375.2|  182|Caenorhabditis elegans Hypothetical
           protein C48B4.10 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 261 CIFLYLTQYCNMLIKSMLFQMDSIP 187
           CI+++    C +LIK+  FQ D +P
Sbjct: 129 CIYIFYLAMCRVLIKASEFQPDDMP 153


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 114 IITKFHYRQVYK*SNVIYLFIYINLEWSPFEKAYFLLTCYNIVSST 251
           +I KF YR++   + +I  F+   L WS F    ++ TC  ++ +T
Sbjct: 124 LIMKFGYRRICSTTCLISTFLTAFLPWSIFFGFPYVATCQFLLGAT 169


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +3

Query: 156 NVIYLFIYINLEWSPFEKAYFLLTCYNIVSSTKKYNPMRE 275
           +++YLFI++ ++  P  +   +   ++I    K+Y+P+ E
Sbjct: 509 SLLYLFIFVTVQMIPAREISIMKDLHHIGREIKRYSPVIE 548


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 93  TYNKVNNI--ITKFHYRQVYK*SNVIYLFIYINL 188
           T++K+ N+  I KF+YR+  +   + YLFI + L
Sbjct: 49  THSKIQNVWDIFKFYYRRFRRILPLYYLFIPVTL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,493,828
Number of Sequences: 27780
Number of extensions: 149448
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)