Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E12
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   4.2  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   9.7  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   9.7  

>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 107 VRVRVPRLGAPPPARVAPSPLVYSI 181
           +R+   RLG   P R AP P+  S+
Sbjct: 742 LRIYAGRLGVSSPVRTAPHPMAMSL 766


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 253 LNCFCNDDVGYDF 291
           L CF NDD+ Y+F
Sbjct: 326 LRCFFNDDISYNF 338


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 98  EVDPRVGDQLGELRRRQDV 42
           ++D   GDQLGEL ++ D+
Sbjct: 167 QIDNYDGDQLGELMKKYDI 185


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 507 PYRLNRTLSIHYLFNY 460
           PYR NR+L +H  F Y
Sbjct: 178 PYRFNRSLRVHSKFVY 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,396
Number of Sequences: 5004
Number of extensions: 29959
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)