Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E12
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0146 + 26969011-26969995,26970878-26970930 31 0.80
09_04_0416 - 17399059-17399777,17400560-17400704 29 3.2
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 28 4.3
06_01_0129 + 1009097-1009681 28 4.3
02_05_0192 + 26602247-26602617,26602701-26603016 28 4.3
09_04_0350 + 16899076-16900164 28 5.6
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 28 5.6
12_02_0046 + 12830974-12832386 27 7.5
11_05_0059 - 18724619-18725053 27 7.5
07_03_1636 + 28290642-28291574 27 9.9
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 27 9.9
03_01_0312 + 2469096-2470862 27 9.9
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = +2
Query: 83 PSGPLPHQVRVRVPRLGAPPPARVAPSP 166
PS PLPH R PR APPPA P
Sbjct: 86 PSPPLPHDNRTPQPR-AAPPPAPAPDQP 112
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +2
Query: 116 RVPRLGAPPPARVAPSP 166
R P L APPP R APSP
Sbjct: 221 RPPDLAAPPPLRPAPSP 237
>12_02_1069 +
25801309-25801433,25802429-25802620,25803130-25803159,
25803426-25803500,25803599-25804373,25804549-25804614,
25804746-25804811,25804898-25805140,25805407-25805502
Length = 555
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 89 GPLPHQVRV-RVPRLGAPPPARVAPSPLV 172
GP PH + R+P APPPA V SP+V
Sbjct: 476 GP-PHMASLPRMPPFMAPPPAAVQSSPVV 503
>06_01_0129 + 1009097-1009681
Length = 194
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 166 WRRRY-SCWWWRAESRHSY 113
WRRR + WWWRA ++ +
Sbjct: 125 WRRRLLAAWWWRATAQRRF 143
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 166 WRRRY-SCWWWRAESRHSY 113
WRRR + WWWRA ++ +
Sbjct: 76 WRRRLLAAWWWRATAQRRF 94
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.9 bits (59), Expect = 5.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 169 EWRRRYSCWWWR 134
EWR+R CW WR
Sbjct: 254 EWRQRSGCWQWR 265
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 83 PSGPLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLMRVV 205
PS P PH + P + PP AP P ++ + +VV
Sbjct: 76 PSPPPPHPAYMHPPPFDSAPPPAAAPPPSDPELQKRIDKVV 116
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 86 SGPLPHQVRVRVPRLGAPPPARVAPSPLVYSIRS 187
S P R APPP RVAP P S+R+
Sbjct: 219 SVPASKATRQSCVTASAPPPRRVAPQPAPPSLRT 252
>11_05_0059 - 18724619-18725053
Length = 144
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 163 RRRYSCWWWRAESR 122
RRR+ CWW R SR
Sbjct: 25 RRRHCCWWSRGRSR 38
>07_03_1636 + 28290642-28291574
Length = 310
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 83 PSGPLPHQVRVRVPRLGAPPPARVAPSP 166
P P P +R P +PPPA+++P P
Sbjct: 167 PYVPPPPDAYLRKPSPPSPPPAKLSPPP 194
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 86 SGPLPHQVRVRVPRLGAPPPARVAPSPLVYSIRSLLMRVVT 208
S PLP V V + G PP P++ +++ L R+V+
Sbjct: 82 SPPLPSSVSVAIAGDGFGPPPNTLTEPVLDTVKRDLARIVS 122
>03_01_0312 + 2469096-2470862
Length = 588
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 92 PLPHQVRVRVPRLGAPPPARVAPSP 166
PLP RV P + PPPA V+ P
Sbjct: 60 PLPEPERVSDPAVPLPPPALVSEPP 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,944,911
Number of Sequences: 37544
Number of extensions: 171111
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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