Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E12
(550 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041168-1|AAH41168.1| 355|Homo sapiens LCN12 protein protein. 31 2.0
BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa prot... 31 2.7
AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa prot... 31 2.7
AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa prot... 31 2.7
AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa prot... 31 2.7
AK022572-1|BAB14106.1| 588|Homo sapiens protein ( Homo sapiens ... 31 2.7
AK001754-1|BAA91885.1| 775|Homo sapiens protein ( Homo sapiens ... 31 2.7
AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens ... 31 2.7
Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein. 30 6.1
BC010123-1|AAH10123.2| 455|Homo sapiens SH3-domain binding prot... 30 6.1
BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif prote... 30 6.1
BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif prote... 30 6.1
AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear r... 30 6.1
AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif prote... 30 6.1
AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens ... 30 6.1
AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein. 30 6.1
AB005047-1|BAA25922.1| 425|Homo sapiens SH3 binding protein pro... 30 6.1
DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein. 29 8.1
BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding doma... 29 8.1
BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif prote... 29 8.1
AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif prote... 29 8.1
AK093078-1|BAC04045.1| 710|Homo sapiens protein ( Homo sapiens ... 29 8.1
AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens ... 29 8.1
AB067474-1|BAB67780.1| 967|Homo sapiens KIAA1887 protein protein. 29 8.1
>BC041168-1|AAH41168.1| 355|Homo sapiens LCN12 protein protein.
Length = 355
Score = 31.5 bits (68), Expect = 2.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 83 PSGPLP-HQVRVRVPRLGAPPPARVAPSPL 169
P P+P H + +VP G PPPA AP PL
Sbjct: 257 PGSPVPGHLLPPQVPCPGPPPPAPPAPGPL 286
>BC020107-1|AAH20107.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149
>AL160004-2|CAI19048.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149
>AL139252-2|CAI22354.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149
>AL121990-3|CAI22011.1| 1156|Homo sapiens nucleoporin 133kDa protein.
Length = 1156
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149
>AK022572-1|BAB14106.1| 588|Homo sapiens protein ( Homo sapiens
cDNA FLJ12510 fis, clone NT2RM2001723. ).
Length = 588
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 551 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 581
>AK001754-1|BAA91885.1| 775|Homo sapiens protein ( Homo sapiens
cDNA FLJ10892 fis, clone NT2RP4002298. ).
Length = 775
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 738 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 768
>AK001676-1|BAA91829.1| 1156|Homo sapiens protein ( Homo sapiens cDNA
FLJ10814 fis, clone NT2RP4000984. ).
Length = 1156
Score = 31.1 bits (67), Expect = 2.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 27 LPPLEDILTAPELAELVSDPRVHFLIKYGYE 119
LP ++D+L A +L L S+P F++K YE
Sbjct: 1119 LPEVKDLLQADQLGSLKSNPYFEFVLKANYE 1149
>Z23064-1|CAA80599.1| 391|Homo sapiens hnRNP G protein protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>BC010123-1|AAH10123.2| 455|Homo sapiens SH3-domain binding protein
5 (BTK-associated) protein.
Length = 455
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 104 DEEVDPRVGDQLGELRRRQDVLERRQQQL 18
+EEVDPR+ +L +L + D + RR+ +L
Sbjct: 38 EEEVDPRIQGELEKLNQSTDDINRRETEL 66
>BC007435-1|AAH07435.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>BC006550-1|AAH06550.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>AY464692-1|AAR28036.1| 391|Homo sapiens heterogeneous nuclear
ribonucleoprotein G protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>AL683813-6|CAI39448.1| 391|Homo sapiens RNA binding motif protein,
X-linked protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>AK096015-1|BAC04674.1| 378|Homo sapiens protein ( Homo sapiens
cDNA FLJ38696 fis, clone KIDNE2001931, highly similar to
HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN G. ).
Length = 378
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 132 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 160
>AF266723-1|AAK58567.1| 391|Homo sapiens RBMX protein.
Length = 391
Score = 29.9 bits (64), Expect = 6.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G PPP R APS V S
Sbjct: 145 GPLPVK-RGPPPRSGGPPPKRSAPSGPVRS 173
>AB005047-1|BAA25922.1| 425|Homo sapiens SH3 binding protein
protein.
Length = 425
Score = 29.9 bits (64), Expect = 6.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 104 DEEVDPRVGDQLGELRRRQDVLERRQQQL 18
+EEVDPR+ +L +L + D + RR+ +L
Sbjct: 8 EEEVDPRIQGELEKLNQSTDDINRRETEL 36
>DQ120650-1|ABB92435.1| 384|Homo sapiens RBM1 protein.
Length = 384
Score = 29.5 bits (63), Expect = 8.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173
>BC065530-1|AAH65530.1| 1003|Homo sapiens methyl-CpG binding domain
protein 6 protein.
Length = 1003
Score = 29.5 bits (63), Expect = 8.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 77 LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
L+P GPL Q+ +++ P GAPPP A SPL ++SL
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 801
>BC012942-1|AAH12942.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 29.5 bits (63), Expect = 8.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173
>AL139416-2|CAI21693.1| 390|Homo sapiens RNA binding motif protein,
X-linked-like 1 protein.
Length = 390
Score = 29.5 bits (63), Expect = 8.1
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +2
Query: 89 GPLPHQVRVRVPRLGAPPPARVAPSPLVYS 178
GPLP + R PR G P P R APS LV S
Sbjct: 145 GPLPVK-RGPPPRSGGPSPKRSAPSGLVRS 173
>AK093078-1|BAC04045.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ35759 fis, clone TESTI2004737. ).
Length = 710
Score = 29.5 bits (63), Expect = 8.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 77 LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
L+P GPL Q+ +++ P GAPPP A SPL ++SL
Sbjct: 468 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 507
>AK056399-1|BAB71176.1| 1003|Homo sapiens protein ( Homo sapiens
cDNA FLJ31837 fis, clone NT2RP7000069, weakly similar to
MUCIN 1 PRECURSOR. ).
Length = 1003
Score = 29.5 bits (63), Expect = 8.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 77 LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
L+P GPL Q+ +++ P GAPPP A SPL ++SL
Sbjct: 762 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 801
>AB067474-1|BAB67780.1| 967|Homo sapiens KIAA1887 protein protein.
Length = 967
Score = 29.5 bits (63), Expect = 8.1
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +2
Query: 77 LRPSGPL-PHQVRVRV-PRLGAPPPARVAPSPLVYSIRSL 190
L+P GPL Q+ +++ P GAPPP A SPL ++SL
Sbjct: 726 LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSL 765
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,913,763
Number of Sequences: 237096
Number of extensions: 969196
Number of successful extensions: 3463
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3450
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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