Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E12
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical p...    29   2.2  
U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    28   3.9  
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    28   3.9  
AF067219-4|AAC17028.1|   82|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U41992-5|AAA83356.1|  549|Caenorhabditis elegans Hypothetical
           protein F32E10.5 protein.
          Length = 549

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 333 TKMIQFKANYIYFYKIIPNVIITKTIKDIKNH 238
           T+++ +  NY + YK  PNV+I K  K +K+H
Sbjct: 518 TQLLAYCINYEFMYKS-PNVVIYKKSKRVKSH 548


>Z74031-17|CAN86923.1|  380|Caenorhabditis elegans Hypothetical
           protein F32D8.7b protein.
          Length = 380

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 77  LRPSGPLPHQVRVRVPRLGAPPPARVAPSPLVYSIRS 187
           L P  P P   R+  P    PPP   APSP V + +S
Sbjct: 229 LAPFRPRPTTRRLPPPTTPPPPPPPPAPSPFVDAFKS 265


>Z74031-16|CAA98452.1|  378|Caenorhabditis elegans Hypothetical
           protein F32D8.7a protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 77  LRPSGPLPHQVRVRVPRLGAPPPARVAPSPLVYSIRS 187
           L P  P P   R+  P    PPP   APSP V + +S
Sbjct: 227 LAPFRPRPTTRRLPPPTTPPPPPPPPAPSPFVDAFKS 263


>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 83  PSGPLPHQVRVRVPRLGAPPPARVAPSPLV 172
           PSGP P     R P L  PPP     +P+V
Sbjct: 311 PSGPAPSIPPPRPPALAPPPPVAPRRNPVV 340


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 83  PSGPLPHQVRVRVPRLGAPPPARVAPSPLV 172
           PSGP P     R P L  PPP     +P+V
Sbjct: 311 PSGPAPSIPPPRPPALAPPPPVAPRRNPVV 340


>AF067219-4|AAC17028.1|   82|Caenorhabditis elegans Hypothetical
           protein R12E2.7 protein.
          Length = 82

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 77  LRPSGPLPHQVRVRVPRLGAPPPARVAPS 163
           L P+G  P    V  P   APPPA  AP+
Sbjct: 45  LGPAGAGPAAYPVAPPSYAAPPPAYAAPA 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,127,468
Number of Sequences: 27780
Number of extensions: 166786
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)