Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E11
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558...    31   0.57 
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    27   7.0  
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108           27   7.0  
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595...    27   7.0  

>04_04_0483 -
           25554531-25554605,25554681-25555644,25555722-25555847,
           25556162-25556331,25556431-25556526
          Length = 476

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 445 LSCYVDRRALREPRQQTNPHQISGHNDNIYPLGR-LIAAEGRPRTSVLPSGGFQRLNNIL 269
           L+C+ DRR  R+PR+Q+         D++  LG+ L A +   +  V P    Q   ++L
Sbjct: 5   LACFGDRRRRRQPRRQSPARSPPPRPDHVALLGKALTAVDVEAKEEVEPPPLLQEAKDVL 64


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 379 SGHNDNIYPLGRLIAAEGRPRTSVLPSGGFQ 287
           SG ND    + +LI  E +P TS LP G  Q
Sbjct: 39  SGENDERQQILQLIIEEIQPETSELPDGRIQ 69


>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
          Length = 510

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 116 VPHNQYNKLGIIFDYLHFLLPRWPSCITVRLS 21
           VP +  + +G +  Y+HF +P  P     RLS
Sbjct: 10  VPEDVESSIGTVLSYIHFAIPDAPVSSHARLS 41


>03_02_0640 -
           10058828-10058971,10059066-10059201,10059512-10059590,
           10060861-10060927,10061014-10061100,10061474-10061567,
           10061663-10061749,10062267-10062328,10062485-10062584,
           10062729-10062827,10062969-10063033,10063617-10063694,
           10063787-10063873,10064383-10064466,10064860-10064955,
           10065045-10065122,10066049-10066139,10066224-10066315,
           10066433-10066560,10067421-10067495,10067670-10067850
          Length = 669

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 168 KNQKFFSTYFFYNYLYISTTQ 106
           +N ++F   FFY+YLY S  Q
Sbjct: 229 QNLRYFHCLFFYSYLYFSLEQ 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,315,643
Number of Sequences: 37544
Number of extensions: 268383
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)