Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E11
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclas...    27   8.2  

>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 264 FLLLMEYFYCIVYNFFMNIFLYIHIS 187
           FL + ++F C++Y+ F  +FL   ++
Sbjct: 244 FLSMSQFFACLIYSVFTKVFLEFQLN 269


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 245 IFIALYITSL*IYFYIYIFQTNR 177
           IFI L   S+   FY+Y+++TNR
Sbjct: 26  IFILLGCMSIVFPFYVYVYKTNR 48


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 347 PAYCSRGSPAYVCAPFRRVSAVEQYPRVSYY*WNIFIALYITS 219
           PAY     PA+  A  R    +E+ P    Y WN++  L+  S
Sbjct: 774 PAYAVNFLPAFRGALSRFKDEIEKVPLDKRYKWNVYCYLFAKS 816


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 347 PAYCSRGSPAYVCAPFRRVSAVEQYPRVSYY*WNIFIALYITS 219
           PAY     PA+  A  R    +E+ P    Y WN++  L+  S
Sbjct: 774 PAYAVNFLPAFRGALSRFKDEIEKVPLDKRYKWNVYCYLFAKS 816


>U49947-2|AAA93421.2| 1032|Caenorhabditis elegans Guanylyl cyclase
           protein 11 protein.
          Length = 1032

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 361 CYRCVH*FDVGLFVDGAHEVLSYLHSNSI 447
           CY+     D  +FV G  EV SYLH+  +
Sbjct: 864 CYKVETIGDAYMFVSGLPEVNSYLHAGEV 892


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,211,033
Number of Sequences: 27780
Number of extensions: 266828
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)