Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E10
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 54 2e-08
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 36 0.004
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 33 0.044
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 29 0.41
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 28 1.3
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 3.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 3.8
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 26 5.1
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 6.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 6.7
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.8
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 54.0 bits (124), Expect = 2e-08
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 7/190 (3%)
Frame = +1
Query: 40 QDAEDELEGGRQAEAKQRADIDAELSRCENLXXXXXXXXXXXXXXXXXXXXXXXXLTSAQ 219
Q++ D E R+A + A +AEL + L S
Sbjct: 851 QESIDNYEQNREALESEVATAEAELELLKEDFASENSKTEKILLAASEKKLVGKRLVS-- 908
Query: 220 KDIQSVQKQTASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLDD-TADTESDPSSLS 396
++ + +E+ I+ SE H ILR+CK++DI VPL EGSL D S+ ++
Sbjct: 909 -ELTKLSGNITLLESEIDRYVSEWHAILRKCKLEDIDVPLREGSLTSIPIDDVSNSGDIT 967
Query: 397 TTEQ------HRRESRIQVDYSALSENLKDLEESDEIKRKADKLQKGINILQNTVDKIQA 558
E+ + + ++VDY L E L+ +D + A LQ+ + +D++ +
Sbjct: 968 MGEEPSEPVINFEKFGVEVDYDELDEELR----NDGSESMASVLQEKLREYSEELDQM-S 1022
Query: 559 PNMRAMPEVD 588
PN+RA+ ++
Sbjct: 1023 PNLRAIERLE 1032
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 211 SAQKDIQSVQKQTASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLDDTADTESD-PS 387
S KD++ +QKQ + +EA + ER + +C+ D + LE + D + S
Sbjct: 1963 STSKDVRMLQKQISDLEASFAASDIERIKGIDECRNRDRTIRQLEAQISKFDDDKKRIQS 2022
Query: 388 SLSTTEQHRRESRIQVDYSALSE 456
S+S E+ + R Q++ SE
Sbjct: 2023 SVSRLEERNAQLRNQLEDVQASE 2045
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.7 bits (71), Expect = 0.044
Identities = 28/116 (24%), Positives = 53/116 (45%)
Frame = +1
Query: 229 QSVQKQTASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLDDTADTESDPSSLSTTEQ 408
+S++K I ++ K SE + +C + L + S TA T+S+PS++S E
Sbjct: 1392 KSLEKHN-QIRQQLSQKTSELEAKVAECH--QLNEQLNKPSATPTATTQSEPSTVSLEEF 1448
Query: 409 HRRESRIQVDYSALSENLKDLEESDEIKRKADKLQKGINILQNTVDKIQAPNMRAM 576
+ + + LSE + L + K + +K+++ N + T + PN M
Sbjct: 1449 NSTKEELSSTQRKLSEIMDILNTT---KEELEKVRQNSNKSEGTSKDTEIPNEEEM 1501
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 29.5 bits (63), Expect = 0.41
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 340 LEGSLDDTADTESDPSSLSTTEQHRRESRIQVDYSALSENLKDLEESDE 486
LEG + D ++ SSLS +Q +S ++ E+LKD ++S+E
Sbjct: 63 LEGDAVVSIDINTEDSSLSPAKQENEKSPEGIEQKYQEEDLKDDKKSNE 111
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 27.9 bits (59), Expect = 1.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 609 FTVSRTSVNFWHRPHVGRLYLVDGVLQDV 523
F + +T + WH PH G L ++G ++ +
Sbjct: 4 FQLPKTLKSLWHHPHNGELISINGWVRSI 32
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 606 TVSRTSVNFWHRPHVGRLYLVDGVLQDVYPFL 511
T TS ++ H V L+DG LQ+ YPFL
Sbjct: 1941 TCESTSTSWKHNLLVFARNLMDGSLQNDYPFL 1972
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +1
Query: 220 KDIQSVQKQTASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLD--DTADTESDPSSL 393
KD ++ K+T ESK ++ ++ + D I V E D +TAD S
Sbjct: 471 KDEKTDSKETEDKVEETESKEAD----VKAKETDSIEVDDKEEKTDSKETADKVEQTDSK 526
Query: 394 STTEQHRRESRIQVDYSALSENLKDLEESDEIKRKADKLQKG 519
T E+ ++ + + A + KD++E +I+ AD G
Sbjct: 527 DTNEKPAKDDNKEANEKAEKVDSKDVKE--KIEEAADLQNSG 566
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 472 EESDEIKRKADKLQKGINILQNTVDKIQAPNMRAMPEVDRSAGDGER 612
E S E+ + LQ + NT+ K + N+ + + S GD ++
Sbjct: 42 EASGELSLLLNSLQFSFKFIANTIRKAELVNLIGLSGIVNSTGDEQK 88
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +1
Query: 505 KLQKGINILQNTVDKIQAPNMR 570
+++K +N+LQ+ V ++QA NM+
Sbjct: 766 EMEKSLNVLQHKVLQLQAVNMK 787
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 421 SRIQVDYSALSENLKDLEESDEIKRKADKLQKGINILQNTVDKIQAPNMRA 573
S I + LSE LKD EES+ + D +++ +N L++ +A RA
Sbjct: 492 SNIPEIIARLSEKLKDREESEAVTE--DLIEEVVNRLRDKAIHKKAEEKRA 540
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 454 ENLKDLEESDEIKRKADKLQKGINILQ 534
EN+ +LEE ++KR D Q+ + LQ
Sbjct: 62 ENVINLEEFRQLKRNCDLYQRNLQKLQ 88
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 250 ASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLDDTADTESDPSSLSTTEQHRRES 423
+S + K S R++I R I + +D + +++PSSL+T+ HR S
Sbjct: 123 SSFDHDYRQKNSPRNSIHRLSNIS-----IGNNPIDFESSQQNNPSSLNTSSHHRTSS 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.339
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,473
Number of Sequences: 5004
Number of extensions: 24691
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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