Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E10
         (620 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.   146   5e-37
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        26   0.84 
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          25   1.9  
AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR ...    25   2.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   3.4  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score =  146 bits (354), Expect = 5e-37
 Identities = 76/194 (39%), Positives = 113/194 (58%)
 Frame = +1

Query: 10   KNVTRWERAAQDAEDELEGGRQAEAKQRADIDAELSRCENLXXXXXXXXXXXXXXXXXXX 189
            KNV RWERA QD ED LE  +QAEA+QR +I+ +  + E +                   
Sbjct: 843  KNVQRWERAVQDDEDSLETFKQAEARQRQEIEKDKEKIELMKQEKAAHKTLVDQMEEEMA 902

Query: 190  XXXXXLTSAQKDIQSVQKQTASIEARIESKRSERHNILRQCKIDDIVVPLLEGSLDDTAD 369
                 + +  K++ ++ +  A+IE+RIES +S+R  IL Q K++ I +PLL+GS+DD   
Sbjct: 903  KARREVQALAKELAAIHQSIANIESRIESMKSKRQTILMQAKMESIEIPLLQGSMDDIGQ 962

Query: 370  TESDPSSLSTTEQHRRESRIQVDYSALSENLKDLEESDEIKRKADKLQKGINILQNTVDK 549
             E      S  E   RESRI++DYS L  +LK+L + D+IK+  D L K +    +T++K
Sbjct: 963  QEYAADGGSAYE---RESRIEIDYSKLEHHLKNLSDPDQIKKSGDSLAKELQSKLDTLEK 1019

Query: 550  IQAPNMRAMPEVDR 591
            IQ PNM+AM ++DR
Sbjct: 1020 IQTPNMKAMQKLDR 1033


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 26.2 bits (55), Expect = 0.84
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +1

Query: 337 LLEGSLDDTADTESDPSSLSTTEQHRRESRIQVDYSALSENLKDLEESDEIKRKADKLQK 516
           L  GS   T+  E+   ++   ++  R  R +        + ++L+ +DEIKR+ + +QK
Sbjct: 112 LRNGSKKMTSTWENTVQNIRDKKEAERLRRDKAKVEEDQRHYRELKAADEIKRR-ELIQK 170

Query: 517 GINILQNTVDKI 552
             +++Q   DK+
Sbjct: 171 AEDLIQK--DKV 180


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 369 HRVRP-LLALHHRAAPQGVENPSGLQCTVRELERSRGIRRDQAQS*QTTERDKHPAEHRR 545
           H+VR  L A   RAA     +PS   C     +  R + ++  Q   T E   H A+   
Sbjct: 71  HQVRENLTACQERAAAGPAPDPSSQFCQQLLDDAQRQMEQEHRQYAATLEEQLHAAQQET 130

Query: 546 Q 548
           Q
Sbjct: 131 Q 131


>AY347946-1|AAR28374.1|  640|Anopheles gambiae putative NPY GPCR
           protein.
          Length = 640

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 342 QQRDYYVVDLALSQYVVP 289
           +Q DYY + L  +Q++VP
Sbjct: 299 EQDDYYTIALLTTQFIVP 316


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 358  DTADTESDPSSLS-TTEQHRRESRIQVDYSALSENLKDLEESDEIKRKADKLQKGINILQ 534
            D+   ++DP   S +T+Q ++  R Q  +   ++NL  +EE       A++ +   N+  
Sbjct: 1269 DSVTIKNDPMKTSGSTQQQQQMERQQFGFGN-NDNLPGVEEVAAELENANESEVAANVEN 1327

Query: 535  NTVDKIQA 558
               D++ A
Sbjct: 1328 QREDEVAA 1335


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.311    0.127    0.339 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,930
Number of Sequences: 2352
Number of extensions: 7023
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)