Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E09
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   122   2e-30
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.5  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   6.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   6.0  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    21   6.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   6.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  122 bits (294), Expect = 2e-30
 Identities = 65/196 (33%), Positives = 110/196 (56%), Gaps = 4/196 (2%)
 Frame = +1

Query: 19  STIKLFVLDEADEMLSRGFKDQIHDVFKMLS----ADVQVILLSATMPDDVLEVSRCFMR 186
           +++K FVLDEAD ML  GF   + ++    S     + Q ++ SAT P++V +++  F+ 
Sbjct: 308 NSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEVQQLAGKFLL 367

Query: 187 DPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLT 366
           + + I V         ++Q +  +   + K   L  + +     + +IF  T+R  D+L 
Sbjct: 368 NYIFIAVGIVGSACTDVEQKFFQVSKFD-KRSKLVSILEKAPNERTLIFVETKRNADFLA 426

Query: 367 ESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 546
             + E++   +++HGD  Q ERE  +  F+TG  +VL+ T + ARG+D++ V  VINYDL
Sbjct: 427 TFLSEQNIQSTSIHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDL 486

Query: 547 PTNRENYIHRIGRGGR 594
           P + + Y+HRIGR GR
Sbjct: 487 PKSIDEYVHRIGRTGR 502


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 477 HHHRPTGSRYRRAASLLCHQL 539
           H HRP  ++ RR A++   QL
Sbjct: 304 HDHRPALAQQRRVAAVQVPQL 324


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 456 YWFVSCAHHHRPTGSRYRRAAS 521
           Y +VS AHHH    +    AA+
Sbjct: 2   YPYVSAAHHHHQAAAAAFGAAA 23


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 456 YWFVSCAHHHRPTGSRYRRAAS 521
           Y +VS AHHH    +    AA+
Sbjct: 61  YPYVSAAHHHHQAAAAAFGAAA 82


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 456 YWFVSCAHHHRPTGSRYRRAAS 521
           Y +VS AHHH    +    AA+
Sbjct: 2   YPYVSAAHHHHQAAAAAFGAAA 23


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 456 YWFVSCAHHHRPTGSRYRRAAS 521
           Y +VS AHHH    +    AA+
Sbjct: 61  YPYVSAAHHHHQAAAAAFGAAA 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,319
Number of Sequences: 336
Number of extensions: 3069
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)