Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E09
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 331 5e-92
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 293 2e-80
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 157 9e-40
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 141 8e-35
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 138 4e-34
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 135 5e-33
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 135 5e-33
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 125 4e-30
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 117 1e-27
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 115 6e-27
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 113 2e-26
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 75 6e-26
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 104 9e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 103 3e-23
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 101 8e-23
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 99 6e-22
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 97 2e-21
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 86 4e-18
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 84 1e-17
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 71 2e-13
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 68 1e-12
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 68 1e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 65 6e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 3e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 52 6e-08
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 50 3e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 42 7e-05
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 42 9e-05
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 39 5e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 36 0.004
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.39
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 29 0.52
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 2.1
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 26 3.6
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 4.8
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 4.8
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 4.8
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 4.8
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar... 25 6.3
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 6.3
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 6.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 8.4
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.4
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 8.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 331 bits (813), Expect = 5e-92
Identities = 150/197 (76%), Positives = 176/197 (89%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
R L +++FVLDEADEMLSRGFKDQI+D+F++L QV+LLSATMP DVLEV+ FM
Sbjct: 155 RALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFM 214
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
RDP+RILV+K+ELTLEGIKQFY+A+E EEWKL+TLCDLY+T+++ QAVIFCNTRRKVDWL
Sbjct: 215 RDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWL 274
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 543
TE + ERDFTVS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYD
Sbjct: 275 TEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYD 334
Query: 544 LPTNRENYIHRIGRGGR 594
LP NRENYIHRIGRGGR
Sbjct: 335 LPANRENYIHRIGRGGR 351
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 293 bits (718), Expect = 2e-80
Identities = 130/197 (65%), Positives = 167/197 (84%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
R LR +K+ +LDEADE+L++GFK+QI+D+++ L QV+++SAT+P DVLE++ F
Sbjct: 157 RNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFT 216
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
+PVRILV+++ELTLEG+KQ++IA+E EEWK +TLCDLYDTL+I QAVIFCN+RRKVDWL
Sbjct: 217 TNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWL 276
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 543
TE M E +FTV++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYD
Sbjct: 277 TEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYD 336
Query: 544 LPTNRENYIHRIGRGGR 594
LP NRENYIHRIGR GR
Sbjct: 337 LPANRENYIHRIGRSGR 353
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 157 bits (382), Expect = 9e-40
Identities = 83/204 (40%), Positives = 127/204 (62%), Gaps = 7/204 (3%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSR-GFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCF 180
R L A IK+FVLDEAD ML + G DQ + +L + Q++L SAT + V + + F
Sbjct: 248 RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF 307
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDW 360
+ I ++ EEL++EGIKQ Y+ + EE K L +LY L+I Q++IFC + +
Sbjct: 308 APNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEE 367
Query: 361 LTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINY 540
+ M TV+ + G+++ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NY
Sbjct: 368 IARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 427
Query: 541 DLPTNR------ENYIHRIGRGGR 594
D+P ++ + Y+HRIGR GR
Sbjct: 428 DMPLDQAGRPDPQTYLHRIGRTGR 451
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 141 bits (341), Expect = 8e-35
Identities = 71/197 (36%), Positives = 121/197 (61%), Gaps = 2/197 (1%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMR 186
L+ +++K FVLDE D++L S + I +VF+ QV++ SAT+ +++ + + FM+
Sbjct: 193 LKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQ 252
Query: 187 DPVRILVQKE-ELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
+P+ I V E +LTL G++Q Y+ +E E+ K + DL D+L Q VIF + + + L
Sbjct: 253 NPLEIYVDDETKLTLHGLQQHYVKLE-EKAKNRKINDLLDSLEFNQVVIFVKSVSRANEL 311
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 543
+ E +F +HG + Q ER + F+ R+ + TD+ RGID+++V+ VINYD
Sbjct: 312 DRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYD 371
Query: 544 LPTNRENYIHRIGRGGR 594
+P + ++Y+HR+GR GR
Sbjct: 372 MPDSPDSYLHRVGRAGR 388
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 138 bits (335), Expect = 4e-34
Identities = 78/197 (39%), Positives = 118/197 (59%), Gaps = 5/197 (2%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFK---MLSADV-QVILLSATMPDDVLEVSRCFMR 186
+ IK VLDEAD ML GF+ QI + + M S + Q ++ SAT P D+ ++R F++
Sbjct: 328 ANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLK 387
Query: 187 DPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI-AQAVIFCNTRRKVDWL 363
D V + V + T E I Q + +E E K L D+ TL +IF T+R D L
Sbjct: 388 DYVFLSVGRVGSTSENITQKVVHVEDSE-KRSYLLDILHTLPPEGLTLIFVETKRMADTL 446
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 543
T+ + +F +++HGD QRERE + FR+G + +++ T + +RG+D+ V+ VINYD
Sbjct: 447 TDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYD 506
Query: 544 LPTNRENYIHRIGRGGR 594
LPT+ ++Y+HRIGR GR
Sbjct: 507 LPTDIDDYVHRIGRTGR 523
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 135 bits (326), Expect = 5e-33
Identities = 73/187 (39%), Positives = 104/187 (55%)
Frame = +1
Query: 34 FVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
FV+DEAD++LS F I + + Q+ L SAT P V + P I +
Sbjct: 190 FVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLM- 248
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHERDFT 393
+ELTL G+ Q+Y ++ E K+ L L+ L I Q++IFCN+ +V+ L + + E ++
Sbjct: 249 DELTLRGVTQYYAFVD-ESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYS 307
Query: 394 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYIH 573
H M Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y+H
Sbjct: 308 CFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
Query: 574 RIGRGGR 594
RIGR GR
Sbjct: 368 RIGRSGR 374
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 135 bits (326), Expect = 5e-33
Identities = 68/193 (35%), Positives = 111/193 (57%), Gaps = 3/193 (1%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 204
+ VLDEAD ML GF+ QI + + D Q ++ SAT P +V ++R ++ D +++
Sbjct: 270 VTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVT 329
Query: 205 VQKEELTLE-GIKQFYIAIELEEWKLETLCDLYDTLSIA--QAVIFCNTRRKVDWLTESM 375
V +L IKQ ++ + + D+ + L + +IF T+R D +T +
Sbjct: 330 VGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFL 389
Query: 376 HERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTN 555
+ + A+HGD Q ER+ ++ +FRTG S +++ TD+ +RGIDV+ ++ V NYD P N
Sbjct: 390 RQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGN 449
Query: 556 RENYIHRIGRGGR 594
E+Y+HRIGR GR
Sbjct: 450 TEDYVHRIGRTGR 462
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 125 bits (302), Expect = 4e-30
Identities = 64/190 (33%), Positives = 107/190 (56%), Gaps = 4/190 (2%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 216
VLDEAD M GF+ Q+ + + D Q +L SAT P + ++R ++ PV I V
Sbjct: 573 VLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGR 632
Query: 217 ELTLEGIKQFYIAIELEEWK----LETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHER 384
+ ++Q + + EE K LE L +LY+ + ++F + + D L + +R
Sbjct: 633 SVVASEVEQI-VEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKR 691
Query: 385 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNREN 564
+T +++HG DQ +R+ + ++ G VLI T ++ARG+DV+ + V+NYD P + E+
Sbjct: 692 GYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMED 751
Query: 565 YIHRIGRGGR 594
Y+HR+GR GR
Sbjct: 752 YVHRVGRTGR 761
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 117 bits (282), Expect = 1e-27
Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 2/198 (1%)
Frame = +1
Query: 7 GLRASTIKLFVLDEADEMLSRGFKDQI-HDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
GL ++ FV+DEAD + GF +Q H + S+++ L SAT+P V E+++
Sbjct: 184 GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVT 243
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIA-QAVIFCNTRRKVDW 360
DP+RI+V ++ + I Q + + + K+ L + + + VIF +
Sbjct: 244 VDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKA 303
Query: 361 LTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINY 540
L + + V +HG++ Q +RE + +FR G VLI TDLLARGID V VIN+
Sbjct: 304 LYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINF 363
Query: 541 DLPTNRENYIHRIGRGGR 594
D P + +YIHRIGR GR
Sbjct: 364 DFPQSVHSYIHRIGRTGR 381
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 115 bits (276), Expect = 6e-27
Identities = 61/197 (30%), Positives = 102/197 (51%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFM 183
+G +K ++DEAD +L F I + K++ + + +L SATM V ++ R +
Sbjct: 183 KGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASL 242
Query: 184 RDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWL 363
PVR+ V + T++ + Q Y+ + K L L + L+ +IF T L
Sbjct: 243 HQPVRVAVSSKFSTVDTLIQRYLFFPFKH-KDTYLVYLVNELAGNSIIIFARTVNDTQRL 301
Query: 364 TESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 543
+ F+ +HG + Q R + +F++G+ L+ TD+ ARG+D+ V VINYD
Sbjct: 302 AILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYD 361
Query: 544 LPTNRENYIHRIGRGGR 594
+PT+ + YIHR+GR R
Sbjct: 362 IPTDSKAYIHRVGRTAR 378
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 113 bits (272), Expect = 2e-26
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 2/200 (1%)
Frame = +1
Query: 1 ARGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCF 180
++G I++ V+DEAD ML GF D+++++ + Q +L SATM D V ++ R
Sbjct: 398 SQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLS 457
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY--DTLSIAQAVIFCNTRRKV 354
+ PVR+ V ++ T + + Q ++ + + L +Y L + +IF ++
Sbjct: 458 LNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFA 517
Query: 355 DWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 534
+ + +HG + Q +R + FR G L+ TD+ +RGID++ + VI
Sbjct: 518 HKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVI 577
Query: 535 NYDLPTNRENYIHRIGRGGR 594
NY+ P E Y+HR+GR R
Sbjct: 578 NYEAPATHEVYLHRVGRTAR 597
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 74.9 bits (176), Expect(2) = 6e-26
Identities = 31/90 (34%), Positives = 58/90 (64%)
Frame = +1
Query: 325 VIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 504
++F T+ V++++E + + ++VS ++G +DQ R + FR G + +L+ TD+ +RG
Sbjct: 350 LVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRG 409
Query: 505 IDVQQVSCVINYDLPTNRENYIHRIGRGGR 594
ID+ ++ VINYD P + ++HR+GR R
Sbjct: 410 IDIPLLANVINYDFPPQPKVFVHRVGRTAR 439
Score = 57.6 bits (133), Expect(2) = 6e-26
Identities = 27/102 (26%), Positives = 53/102 (51%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRD 189
L S+I+ V DEAD + GF Q+ ++ L Q +L SAT+P +++ ++ ++D
Sbjct: 209 LELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQD 268
Query: 190 PVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI 315
PV + + E ++ + +++ E + LC L D + +
Sbjct: 269 PVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKL 310
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 104 bits (250), Expect = 9e-24
Identities = 66/205 (32%), Positives = 116/205 (56%), Gaps = 9/205 (4%)
Frame = +1
Query: 7 GLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSA--DVQVILLSATMPDDVLEVSRCF 180
GLR IK V+DEAD +LS F D + D F +L A D Q +L +AT+ D + ++
Sbjct: 150 GLRR--IKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQP 207
Query: 181 MRD---PVRIL-VQKEELTLEG-IKQFYIAI--ELEEWKLETLCDLYDTLSIAQAVIFCN 339
++ P+ + V+ + +++ ++Q YI + ++ E L L + + A+IF N
Sbjct: 208 QKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTIPENAK-KSAIIFVN 266
Query: 340 TRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ 519
R + + + + V+ +H +M QRER + +FR ++++L+ TD+ +RG+D+
Sbjct: 267 RTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPS 326
Query: 520 VSCVINYDLPTNRENYIHRIGRGGR 594
V VIN+DLP + ++YIHR+GR R
Sbjct: 327 VQLVINFDLPRDPDDYIHRVGRTAR 351
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 103 bits (246), Expect = 3e-23
Identities = 66/202 (32%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFKML-----SADVQVILLSATMPDDVLEVSRCFM 183
S + VLDEAD ML GF+ I ++ + Q + SAT P+ V ++ F+
Sbjct: 308 SQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFL 367
Query: 184 RDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDT-LSIA---QAVIFCNTRR 348
+DPV+I + +EL + I Q ++ K L +L LS ++ +
Sbjct: 368 KDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYK 427
Query: 349 KVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSC 528
K E R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V
Sbjct: 428 KEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQL 487
Query: 529 VINYDLPTNRENYIHRIGRGGR 594
VIN P E+Y+HRIGR GR
Sbjct: 488 VINVTFPLTIEDYVHRIGRTGR 509
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 101 bits (242), Expect = 8e-23
Identities = 58/201 (28%), Positives = 108/201 (53%), Gaps = 4/201 (1%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKML-SADVQVILLSATMPDDVLEVSRCF 180
+G ++ V+DEAD +L GF+D++ + K+L S + Q +L SAT V +++R
Sbjct: 230 KGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLARIS 289
Query: 181 MRD-PVRILVQ--KEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRK 351
++ P+ + V K T+EG++Q Y+ ++ ++ L L L + ++F ++
Sbjct: 290 LKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNLK-KKVIVFMSSCAS 348
Query: 352 VDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCV 531
V ++ E ++ D V +HG Q+ R +F +L+ T++ ARG+D+ V +
Sbjct: 349 VKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWI 408
Query: 532 INYDLPTNRENYIHRIGRGGR 594
+ YD P + +YIHR+GR R
Sbjct: 409 VQYDPPDDPRDYIHRVGRTAR 429
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 98.7 bits (235), Expect = 6e-22
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 4/196 (2%)
Frame = +1
Query: 19 STIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVR 198
S +++ +LDEAD +L GF+ + + L Q +L SAT V +++R +++P
Sbjct: 184 SGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDF 243
Query: 199 ILVQKEEL--TLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTES 372
I V + + T + QFY+ + L E KL+ L T + ++F ++ ++V ++ E+
Sbjct: 244 ISVHENDTSSTPSNLNQFYLTVPLTE-KLDILFGFIRTHLKFKTIVFLSSCKQVRFVYET 302
Query: 373 MHERDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 546
+S +H G Q R + +F + VL TD++ARG+D V VI D
Sbjct: 303 FRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDA 362
Query: 547 PTNRENYIHRIGRGGR 594
P + + YIHR+GR R
Sbjct: 363 PEDVDTYIHRVGRTAR 378
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 97.1 bits (231), Expect = 2e-21
Identities = 56/206 (27%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKML-------------------SADVQVILLSATMPDDV 159
V+DEAD ML GF+D ++ + L S+ Q I+ SAT+P V
Sbjct: 404 VMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRV 463
Query: 160 LEVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVI-FC 336
+++ ++ +PV + + ++ ++Q I + K + ++ ++ + +I F
Sbjct: 464 ANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFV 523
Query: 337 NTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQ 516
N +R ++ + + ++ + +HG Q +RE + Q R ++ +L+ TD+ RGID+
Sbjct: 524 NLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIP 583
Query: 517 QVSCVINYDLPTNRENYIHRIGRGGR 594
VS V+NY++ + E+Y HRIGR GR
Sbjct: 584 NVSLVLNYNMAKSIEDYTHRIGRTGR 609
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 85.8 bits (203), Expect = 4e-18
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 8/205 (3%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSAD-VQVILLSATMPDDVLEVSRCF 180
R L + + F+LDEAD ++ GF + I ++ + ++ + + SATMP V V R
Sbjct: 182 RILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGI 241
Query: 181 MRDPVRI---LVQKEELTLEGIKQFYIAIELEEW---KLETLCDLYDTLSIAQAVIFCNT 342
+ ++ L E T E + QF I +L++ L L L + ++ ++F T
Sbjct: 242 LGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSNPSSRIIVFLPT 301
Query: 343 RRKVDWLTESMHER-DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ 519
VD++ + +H + +R I FR S +L TD++ARG+D
Sbjct: 302 ISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPN 361
Query: 520 VSCVINYDLPTNRENYIHRIGRGGR 594
++ V+ P+N ++YIHRIGR GR
Sbjct: 362 ITQVVQITGPSNTDDYIHRIGRTGR 386
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 84.2 bits (199), Expect = 1e-17
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCF-MRDPVRI 201
+++ +LDEAD ++ GF+ + + L + L SATM D V + +R+ VR+
Sbjct: 155 LEILILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRV 214
Query: 202 LVQKEELTLEGIKQFYIAIEL----EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTE 369
V ++ +AI+ +K++ + L T+ +A++F ++ V++
Sbjct: 215 SVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNS 274
Query: 370 SM--HERDFTVSAMHGDMDQREREVIMRQFRTGSSR-VLITTDLLARGIDVQQVSCVINY 540
++ F + A+HG Q R +F+ + + VL TTD+ +RG+D+ V V+
Sbjct: 275 LFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQL 334
Query: 541 DLPTNRENYIHRIGRGGR 594
D P + +++ HR GR GR
Sbjct: 335 DPPLDPKSFSHRCGRAGR 352
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.5 bits (165), Expect = 2e-13
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 21/204 (10%)
Frame = +1
Query: 46 EADEMLSRGFKDQIHDVFKM-LSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKEEL 222
+ D+ +S F I + L + +Q ++ SAT+ D +++ + +P +LVQ +++
Sbjct: 327 DLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDM 386
Query: 223 TLEGIKQ-------FYIAIELEEWKLET-------LCDLYDTLSIAQAVIFCNTRR---K 351
++ + F + L+E+ + L L + ++ + F + +
Sbjct: 387 EVDDGGEIEDDAIVFSVPPTLQEYHVSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAAR 446
Query: 352 VDWLTESMHE---RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 522
+ L E +HE + F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV
Sbjct: 447 LHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANT 506
Query: 523 SCVINYDLPTNRENYIHRIGRGGR 594
VINYD P + +Y+HRIGR R
Sbjct: 507 QNVINYDPPLSVRSYVHRIGRTAR 530
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLS 111
++ V+DEAD +L + F+D + V +S
Sbjct: 286 LRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 67.7 bits (158), Expect = 1e-12
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Frame = +1
Query: 37 VLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
V+DEA +L+ G ++ + ++ + LLSAT P + V+R +L ++
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVL-RE 1378
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI---AQAVIFCNTRRKVDWLTESMHER 384
E I F + E+ L+ + T +A+IFC T++ V+++ +H+
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 385 DF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDL 546
D V+ GD+ ER++ FR G +R++I T GI+ V V++Y L
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1498
Query: 547 PTNRENYIHRIGRGGR 594
P + +Y+ GR GR
Sbjct: 1499 PASSMDYVQETGRAGR 1514
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 67.7 bits (158), Expect = 1e-12
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Frame = +1
Query: 37 VLDEADEMLSRG-FKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQK 213
V+DEA +L+ G ++ + ++ + LLSAT P + V+R +L ++
Sbjct: 1320 VIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFYVL-RE 1378
Query: 214 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSI---AQAVIFCNTRRKVDWLTESMHER 384
E I F + E+ L+ + T +A+IFC T++ V+++ +H+
Sbjct: 1379 TSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQS 1438
Query: 385 DF----TVSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDL 546
D V+ GD+ ER++ FR G +R++I T GI+ V V++Y L
Sbjct: 1439 DLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGL 1498
Query: 547 PTNRENYIHRIGRGGR 594
P + +Y+ GR GR
Sbjct: 1499 PASSMDYVQETGRAGR 1514
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 65.3 bits (152), Expect = 6e-12
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 24/214 (11%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADV----QVILLSATMPDDVLEVSRCFMR-- 186
IK VLDEAD +L + +++ + ++L + Q + SAT + + + + M+
Sbjct: 269 IKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGN 328
Query: 187 ------DPVRILVQKEELT-----LEGIKQFYIAIELEEWKLETLC---DLYDTLSI--- 315
P+ ++++ L+ Q +A + E +E DLY I
Sbjct: 329 ITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY 388
Query: 316 -AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 492
+ ++F N + +T ++E +H +DQ++R + +F+ VL+ TD+
Sbjct: 389 PGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDV 448
Query: 493 LARGIDVQQVSCVINYDLPTNRENYIHRIGRGGR 594
ARGID+ V+ VI+Y +P + Y+HR GR R
Sbjct: 449 AARGIDIPSVTHVIHYHVPHTADMYVHRSGRTAR 482
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Frame = +1
Query: 394 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPTNREN 564
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 565 YIHRIGRGGR 594
Y+HRIGR R
Sbjct: 530 YLHRIGRTAR 539
Score = 31.9 bits (69), Expect = 0.073
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 LRASTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPD-DVLEVSRCFMR 186
L S ++ VLDE D ++ GF++ + + L + +I ++P V + M+
Sbjct: 290 LDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMK 349
Query: 187 DPVRIL 204
D V+ L
Sbjct: 350 DTVKRL 355
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 52.0 bits (119), Expect = 6e-08
Identities = 19/34 (55%), Positives = 29/34 (85%)
Frame = +1
Query: 493 LARGIDVQQVSCVINYDLPTNRENYIHRIGRGGR 594
+ARG+D + V+CV+N+D+P+N ++YIHRIGR R
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSYIHRIGRTAR 419
Score = 51.2 bits (117), Expect = 1e-07
Identities = 36/155 (23%), Positives = 71/155 (45%)
Frame = +1
Query: 25 IKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRIL 204
+K V+DEAD MLS G+ + + + + L Q L+SAT+ ++ + + R+P IL
Sbjct: 165 LKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPF-IL 223
Query: 205 VQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHER 384
K++ + Q+ + ++ L L L + +IF N + L + +
Sbjct: 224 AVKDKEASGKLTQYVVKCSEQDKFLLAYILLKLRLIKGKILIFVNEINRCYRLKLFLEQF 283
Query: 385 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTD 489
++ ++ R I+ Q+ G +++I TD
Sbjct: 284 GLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATD 318
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 50.0 bits (114), Expect = 3e-07
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +1
Query: 325 VIFCNTRRKVDWLTESMHERDFTVSAMH--GDMDQREREVIMRQFRTGSSRVLITTDLLA 498
+I+C +R + + + D+ + A H +++ ER+ I ++++GS ++++ T
Sbjct: 746 IIYCLSRTSCEQVAAKLRN-DYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFG 804
Query: 499 RGIDVQQVSCVINYDLPTNRENYIHRIGRGGR 594
G+D V VI++ P + E Y GR GR
Sbjct: 805 MGVDKGDVRFVIHHSFPKSLEGYYQETGRAGR 836
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 397 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYIHR 576
SA M+Q +++ + QFR G L+ T + G+D+ +I YD ++ I R
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQR 568
Query: 577 IGRGGR 594
+GR GR
Sbjct: 569 MGRTGR 574
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 41.5 bits (93), Expect = 9e-05
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 415 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYIHRIGRGGR 594
M Q+ + ++QF+ G LI T + G+D+ +V +I YD + + R+GR GR
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR 535
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 316 AQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 495
+ ++FC + + + A+ G+ + ERE +++ FR VL+ +L
Sbjct: 266 SSTLVFCINVEHSLKVCNAFRKLGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVL 325
Query: 496 ARGIDVQQVSCVINYDLPTNRENYI-HRIGRGGR 594
G D+ + C++ PT+ N + IGRG R
Sbjct: 326 TEGTDIPNIDCLM-IARPTSSPNLLTQMIGRGLR 358
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 35.9 bits (79), Expect = 0.004
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 415 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPTNRENYIHRIGR 585
M R ++ + +F+TG VLI T + GIDV + VI +++ Y+ GR
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR 463
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.5 bits (63), Expect = 0.39
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Frame = -1
Query: 536 LMTQETCCTSIPRASRSVVMSTRDEPVRNCLMITSRSRWSMSPCMADTVKSRSCIDSVSQ 357
L+ + ++I +S SV +S + + +TS + S+S + T S+ + S S
Sbjct: 138 LLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLS---SSTSSSQPSVSSTSS 194
Query: 356 STLRRVLQKITACAI---ESVXXXXXX--XXXXXXXXSMAM*NCLIPSSVSSSFWTRIRT 192
ST T+ + SV S ++ IPS+ SSS T +
Sbjct: 195 STFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSST---S 251
Query: 191 GSLMKQRDTSNTSSGIVAESKIT*TSADNILKTSWI*SLNPLDNISSASSSTKS 30
SL +S SS + S I+ +S+ + TS +++ + SS+ +ST S
Sbjct: 252 SSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSS 305
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 29.1 bits (62), Expect = 0.52
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 131 YFLLQCLMMYWKCLVAS*EILYGSLSKRRSLHWKVLNNSTLPLS*K 268
YFL CL+ +W +V +Y + K R H K+ ++ LPL K
Sbjct: 73 YFLASCLLTFWSSVVKG-STVYVATKKER--HIKISADTFLPLKNK 115
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEW 273
+ DP R V+KE+LT G+ + A + + W
Sbjct: 65 LTDPARNFVEKEDLTALGVNVYNNADDWKNW 95
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 52 DEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVL 162
+EMLS +H V+ S + + LS+T P+ +L
Sbjct: 299 EEMLSPSSLYTLHQVYTATSESINIKTLSSTTPEYIL 335
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -3
Query: 252 NVELFNTFQCKLLLLDKDPYRISHEATRHFQYIIRHCSRK*NNLNISRQHLENIMDLIFE 73
NVE N + L K+ ++ E R ++++ CS + +N+ Q +N + +FE
Sbjct: 281 NVETTNLKKYSSFLALKEAVSMTSEQLRVLEHLLSECS---HEINVLSQQSKN-FNGVFE 336
Query: 72 SSR*HFISFI*HE 34
SS I+ + H+
Sbjct: 337 SSYQPLINDLDHQ 349
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 296 YMTHSLLHRLLFSATPVVR*TG*PSLCMSATSPCRPCTVTWTS 424
+ TH L +L F P + + S+ +S+TSP P T+ W +
Sbjct: 190 FKTHFLFSQLSFECIPHLSDS---SIQLSSTSPVIPFTLKWNN 229
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 180 EATRHFQYIIRHCSRK*NNLNISRQHLENIMD 85
E FQ I++H S N L R+HL N +D
Sbjct: 139 EEIERFQAILKHPSFVSNPLETVREHLGNSLD 170
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 4 RGLRASTIKLFVLDEADEM 60
R + AST K+ +LDEAD M
Sbjct: 114 RQIFASTFKMIILDEADAM 132
>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
lipase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 265 EEWKLETLCDLYDTLSIAQAVI--FCNTRRKVDW 360
+EWKL+ + D YD ++ QAV R + DW
Sbjct: 143 DEWKLDPVYDYYD-YTLVQAVYSSLVKHREQKDW 175
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 337 NTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRV 474
N ++ TES +R V + D + +R+ R+F G RV
Sbjct: 25 NNKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRV 70
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 373 MHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID-VQQVSCVIN 537
+H++ V GD + + ++ + + TG +RV++TT L RG++ VQ + +++
Sbjct: 257 LHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTT-LDGRGLEYVQPIGKILH 311
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 233 PSSVSSSFWTRIRTGSLMKQRDTSNTSSGIVAESKIT*TSADNILKTSWI*SLNPLDNIS 54
PSS SSS + + S +S++SS + S + +S+ + +S S P+ + +
Sbjct: 155 PSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSST 214
Query: 53 SASSSTKS 30
S+S S+ S
Sbjct: 215 SSSHSSSS 222
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 181 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQA 324
M++P+R+ + EE T++ +LEE + E L +T+ A
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETIDFEHA 183
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +1
Query: 37 VLDEADEMLSRGFKDQIHDVFKMLSADVQVILLSATMPDDVLEVSRCFMRDPVRILVQKE 216
V+DE + LS +DQ++D+ K S+ + I + + EVS + D V + V +
Sbjct: 25 VIDERTKRLSAHLRDQVNDLTKSSSSKEEGI-----ADNSLKEVSSSEVSDNVGMEVDQP 79
Query: 217 ELTLEG 234
+++ G
Sbjct: 80 KVSTSG 85
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 163 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLY 300
+ S+ FM D + +E +L G+K+FY LE +ETL +Y
Sbjct: 1088 KTSKVFMNDSSVL----KEASLSGLKEFYFCEPLE--CVETLVQIY 1127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,154
Number of Sequences: 5004
Number of extensions: 49937
Number of successful extensions: 189
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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