Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E06
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   9.0  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   9.0  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 429 MRIHHVISQEVGLELIKTVQADHHSCLRI 343
           + + H IS   GLEL++++  +HH   +I
Sbjct: 208 LNVDH-ISTTFGLELLESILVNHHRLFQI 235


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 337 MVDPKTGVMVCLHCLDEFESNLLADH 414
           +VD + GV+ C  C  E E+    DH
Sbjct: 184 LVDSEDGVLRCARCQWELENPYHCDH 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,219
Number of Sequences: 5004
Number of extensions: 33196
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)