Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E06
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1021 + 33565866-33567431,33568317-33568604 29 1.3
02_01_0586 - 4334896-4335177,4336340-4338007 29 1.3
09_04_0210 + 15644151-15644609 29 1.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 2.9
04_04_1596 + 34684943-34686340,34688085-34688175,34688290-346883... 27 5.1
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 27 5.1
09_03_0051 + 11902322-11903125 27 6.7
11_06_0513 + 24466131-24469487 27 8.8
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 27 8.8
11_03_0072 + 9605273-9606814,9616982-9617016,9617271-9617348,961... 27 8.8
08_02_0068 + 11873116-11873154,11873589-11873882 27 8.8
03_04_0097 - 17272138-17273082 27 8.8
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 401 RLDSNSSRQCRQTITPVLGSTIASVELNSIGSWLVCT 291
RL S SS + +T P LGS I V++ G W++ T
Sbjct: 426 RLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGT 462
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 401 RLDSNSSRQCRQTITPVLGSTIASVELNSIGSWLVCT 291
RL S SS + +T P LGS I V++ G W++ T
Sbjct: 460 RLYSKSSMRMAKTAFPGLGSPITHVDVTYDGKWILGT 496
>09_04_0210 + 15644151-15644609
Length = 152
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 346 PKTGVMVCLHCLDEFESNLLADHMMNAHNYRR 441
P G +C++C +F+S+ NAH Y R
Sbjct: 29 PLVGFFLCMYCDRKFDSSQALGGHQNAHKYER 60
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 133 VSNNNKTIIMEMEIDPLEGSSYELNRIIKPEIKQEDEEE---DHYNTMDLLQLAQCVQTN 303
+ N+NKT+++E+E P++ E + +I EDE+E H N +++ V+
Sbjct: 687 IKNDNKTVLVEVE-SPVKNVCLETLE-TERDILSEDEKEMEVGHVNECSEIEVGLMVKEV 744
Query: 304 QDPIEFNSTDA 336
+ IE D+
Sbjct: 745 VNKIELEEADS 755
>04_04_1596 +
34684943-34686340,34688085-34688175,34688290-34688354,
34688530-34688581,34688747-34688829,34688942-34689035,
34689468-34690051
Length = 788
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 172 IDPLEGSSYELNRIIKPEIKQEDEEEDH--YNTMDLLQLAQCVQTN 303
+DP+ + E + + E ++E+EEED Y ++D + + C T+
Sbjct: 12 MDPVGDEAAERREMEEKEEEEEEEEEDEEFYESLDRILSSSCSSTS 57
>03_01_0050 +
430744-431337,432131-432249,432539-433084,433177-433483,
433605-433773,433861-433960,435805-436103,436796-436869,
437007-437442,437622-437650
Length = 890
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 223 EIKQEDEEEDHYNTMDLLQLAQCVQTNQDPIEFN--STDAMVDPKTGVMVCLHCLDEFES 396
++ +E DH ++M L + ++ DPI N S M PK G+ + CL EF+
Sbjct: 705 DVTNREETRDHVDSM-LNYVFN--RSRDDPIAVNQGSLIEMTGPKRGIALIPECLFEFDM 761
Query: 397 NL 402
+
Sbjct: 762 RI 763
>09_03_0051 + 11902322-11903125
Length = 267
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 217 KPEIKQEDEEEDHYNTMD-LLQLAQCVQTNQDPIEFNSTDAMVDPKTGVMV 366
+PE ++E+EE+ +Y +MD L + P E + VD K +V
Sbjct: 130 RPETEEEEEEDANYMSMDEAYALVMAARQRPPPTEEEVRRSEVDAKAEELV 180
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 26.6 bits (56), Expect = 8.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 426 RIHHVISQEVGLELIKTVQADHHSCLR 346
R+ H++++ G EL K + DH + L+
Sbjct: 530 RVLHILARHKGQELYKAIVGDHSAALK 556
>11_04_0166 +
14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 355 GVMVCLHCLDEFESNLL 405
G M C HC+DE ES L
Sbjct: 344 GFMACTHCMDESESMYL 360
>11_03_0072 +
9605273-9606814,9616982-9617016,9617271-9617348,
9617427-9617501,9617583-9617657,9617731-9617977,
9618070-9618313,9618852-9619309,9619388-9619675,
9619751-9619788,9619882-9620452
Length = 1216
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 355 GVMVCLHCLDEFESNLL 405
G VC HC+DE ES L
Sbjct: 449 GYKVCTHCMDETESTYL 465
>08_02_0068 + 11873116-11873154,11873589-11873882
Length = 110
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 284 PNACKPTKILLNLTRPMQWSILRQE*WSACTVLMSSSPTSW 406
P A K +N TR ++++QE +AC M++ +W
Sbjct: 35 PEASKLEMDSMNATRAKGGNMMKQEGHTACACAMATDSATW 75
>03_04_0097 - 17272138-17273082
Length = 314
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 238 DEEEDHYNTMDLLQLAQCVQTNQD 309
+EEE+ MDLL++AQ V N D
Sbjct: 15 EEEEEERKEMDLLEIAQRVADNID 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,475,659
Number of Sequences: 37544
Number of extensions: 206564
Number of successful extensions: 557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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