Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E05
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 27 1.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 1.9
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 26 3.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 7.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 9.9
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 9.9
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.9
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 9.9
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.4
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 15 LPKPSPTPSAESPYFYVLSESNGRFYFHEGDRRIPLPLSKNAFDNNNDARD--VTSFAET 188
+P P PT + SP + +NG + + + N+ D V + +
Sbjct: 218 MPAPGPTAVSASPSLQSMPPTNGVIPGAQPSIEASIEKESTSIRNSTVTNDRVVNTTVDV 277
Query: 189 DEEQIQEDVQPGK-VEVKQEGGSASRPSLE 275
+ Q E P K V Q SA++P E
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTE 307
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 182 RNRRGADTGGRPARQG-RGEAGGGLRLQAEPRVLAG 286
R RG GGR G RG A GG ++ EP AG
Sbjct: 47 RGGRGGARGGRGGSSGGRGGAKGGAKVIIEPHRHAG 82
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +3
Query: 66 LSESNGRFYFHE-GDRRIPLPLSKNAFDNNNDARDVTSFAETDEEQIQEDVQPGKVEVKQ 242
LS S +F+ H P P S++ + NN+ + +SF + + Q+ +
Sbjct: 46 LSRSTFQFHKHHLSGNENPQPSSESPYFTNNERLNSSSFPQIHDNQLSPSFNTSYQAIPS 105
Query: 243 EGGSASR 263
+ SR
Sbjct: 106 SSSNRSR 112
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 129 SKNAFDNNNDARDVTSFAETDE-EQIQE 209
S N NNN ++D+ S + T+E EQI+E
Sbjct: 237 SMNNNVNNNKSKDIWSSSNTEEREQIRE 264
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.0 bits (52), Expect = 7.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 15 LPKPSPTPSAESPYFYVLSESNGRFYFHEGDRRIPLPLS 131
LP PS S+ SP+ Y+ + RF R P P S
Sbjct: 76 LPTPSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRS 114
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 138 AFDNNN--DARDVTSFAETDEEQIQEDVQPGKVEVKQEGGSA 257
A DN+ DA+ + AE DEE + + E+ +E G+A
Sbjct: 4196 AIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGAA 4237
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 9.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +3
Query: 144 DNNNDARDVTSFAETDEE---QIQED--VQPGKVEVKQE 245
DN+ND D + + TDEE Q++E V+ + EV QE
Sbjct: 46 DNDNDENDSSEESATDEEAERQVREGFIVEDEEDEVPQE 84
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 24.6 bits (51), Expect = 9.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 148 LSKAFLERGRGMRLSPSWK*NRPLDSLST*KYGDSALGVGDGF 20
+S E R R SWK P ++ K+GD+ +G+ F
Sbjct: 522 ISGQLCEEERKKRNEDSWKRRPPAKRVNYQKFGDNFSEIGNPF 564
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 105 DRRIPLPLSKNAFDNNNDARDVTSFAETDEEQIQEDVQPGKVEVKQ 242
DRR P ++ A N+ND D SF E D I++ G KQ
Sbjct: 117 DRRNYPPQNRTAKPNDNDGDDY-SFFEDDLPVIKDTFMRGFQSFKQ 161
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 153 NDARDVTSF-AETDEEQIQEDVQPGKVEVKQEGGSAS 260
N+ D+ F AE +EE+ QE+ Q E ++E G+ S
Sbjct: 330 NEEDDLGDFIAEEEEEEEQEEEQEEDEEDEEEVGAGS 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,657
Number of Sequences: 5004
Number of extensions: 27243
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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