Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E05
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    29   2.2  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 117  PLPLSKNAFDNNNDARDVTSFAETDEEQIQEDVQPGKVEVKQEGGSASRPSLES 278
            P P S  A +NN+  R V     T     QE   P     K+   +  +PSLE+
Sbjct: 1921 PAPASATAGNNNSQVRSVPPPTTTTSSSNQES-SPASNSSKKSNDNTDQPSLET 1973


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 117  PLPLSKNAFDNNNDARDVTSFAETDEEQIQEDVQPGKVEVKQEGGSASRPSLES 278
            P P S  A +NN+  R V     T     QE   P     K+   +  +PSLE+
Sbjct: 1921 PAPASATAGNNNSQVRSVPPPTTTTSSSNQES-SPASNSSKKSNDNTDQPSLET 1973


>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 129 SKNAFDNNNDARDVTSFAETDEEQIQEDVQPGKVEVKQEGGSASRP 266
           + N ++NNN+       A+  ++Q+Q+ VQ  +  V+Q   +  RP
Sbjct: 85  NNNNYNNNNNYNQQPQGAQQPQQQVQQQVQQPQQPVQQPQPTPIRP 130


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 46  SLRTSTC*ANPXXXXXXXXXXXAYLCPSPRTLSTTITM 159
           +L T TC  +P           +Y C S  T+STT T+
Sbjct: 220 NLATPTCRYDPTSTAPHIKYDTSYTCASTTTVSTTSTV 257


>AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical
           protein Y75B8A.3 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = +3

Query: 45  ESPYFYVLSESNGRFYFHEGDRRIPLPLSKNAFDNNNDARDVTSFAETDEEQIQEDVQPG 224
           + P  Y+LS  N   Y   G  +     + N + NN    +VT ++  +     +  QP 
Sbjct: 546 QQPREYLLSNHNQNQYGSSGQNQNQNQQTSNQYQNNGVYTNVTQYSNVNNNYGYQRDQPA 605

Query: 225 KVEVKQEGGSAS 260
              ++   G+ +
Sbjct: 606 TTGMQTVNGNGN 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,053
Number of Sequences: 27780
Number of extensions: 171843
Number of successful extensions: 766
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)