Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E05
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.39 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.39 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.68 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.68 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.90 

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -1

Query: 138  RSWRGAEVCACPPRGSRTARWIRSARRSTET 46
            R WRG+   AC   G  T  W +       T
Sbjct: 1325 RPWRGSATLACNAVGDPTREWYKGQGEQIRT 1355


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -1

Query: 138  RSWRGAEVCACPPRGSRTARWIRSARRSTET 46
            R WRG+   AC   G  T  W +       T
Sbjct: 1321 RPWRGSATLACNAVGDPTREWYKGQGEQIRT 1351


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 81  RWIRSARRSTETLRWAWATASVRFSSC 1
           +W  S    TE L WA  T  +  S+C
Sbjct: 423 KWFNSLDIRTEELIWARGTKDIPISAC 449


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -1

Query: 81  RWIRSARRSTETLRWAWATASVRFSSC 1
           +W  S    TE L WA  T  +  S+C
Sbjct: 513 KWFNSLDIRTEELIWARGTKDIPISAC 539


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 210 DVQPGKVEVKQEGGSASRPSLESW 281
           D+  GKVE+    G A+ P+L  W
Sbjct: 819 DLSTGKVEMITGVGKATSPNLTKW 842


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,925
Number of Sequences: 438
Number of extensions: 1794
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)