Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E04
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.3  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   3.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    25   7.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   7.2  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   9.5  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   9.5  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 252 CMALYPSHTCNNQEEFDHSVILHLCLCYHFVGGFAAL 142
           C++LY S T   +E+      L++C C  F G F  L
Sbjct: 152 CLSLYISMTYKREEQGKRLAYLYVCSC--FSGAFGGL 186


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 303 ACGRCTPKQKLAFRTLLLAIRAKSEPRFLELLDKYDPNRA 422
           A G C  + K AF      + +KSEP+ +E LDK+   +A
Sbjct: 206 AHGPCGEEFKAAFSCF---VYSKSEPKGMECLDKFQAMQA 242


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 135 IPPPVSKHRDSNKLLIFKVIRNSSMKVG 52
           IP  VSKH      L+F+++    +KVG
Sbjct: 414 IPTEVSKHHAQLLPLVFELMSTQGVKVG 441


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 177 LCYHFVGGFAALSVIPPPVSKHRDSN 100
           LCY +    +A+S++PP    H  SN
Sbjct: 767 LCYVYARATSAVSLVPPVYYAHLVSN 792


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 237 PSHTCNNQEEFDHSVIL 187
           PSH  N Q++FD+S +L
Sbjct: 65  PSHLQNFQDQFDYSSVL 81


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 361 IARSRVRKASFCLGVQRPQAVGKASGRAR-LNIFPSFVHGPLS 236
           IA  +V         Q+P A  KA+G+ + + I P+F H P+S
Sbjct: 119 IAEKQVEDRKLSDDSQKPLAP-KANGKEKWVTITPNFTHTPIS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,151
Number of Sequences: 5004
Number of extensions: 32420
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)