Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E04
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0560 + 30244814-30244871,30244979-30245140,30245725-302457... 29 1.3
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 29 1.7
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 29 2.3
03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999... 28 4.0
04_01_0446 - 5815231-5816202 27 5.3
09_06_0307 - 22190310-22190468,22190516-22190569,22190677-221910... 27 7.1
07_03_1520 + 27415266-27415507,27415608-27415722,27415761-274158... 27 7.1
02_01_0588 + 4350971-4351514,4351639-4351703 27 7.1
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 27 7.1
04_01_0056 - 579934-579993,580064-580243,580349-580507,581004-58... 27 9.3
>01_06_0560 +
30244814-30244871,30244979-30245140,30245725-30245786,
30246170-30246214,30246358-30246363,30246424-30246624,
30246735-30248024
Length = 607
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/32 (28%), Positives = 23/32 (71%)
Frame = +1
Query: 259 MEKYSSVLYLKLYQQPVDVALLSKN*PSAPYF 354
ME+Y+++L++ ++++P+D L ++ +P F
Sbjct: 517 MERYANILHISIFRKPLDERTLPRSLQESPVF 548
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 234 SHTCNNQEEFDHSVILHLCLCYHFVGGFAALSVIPPPVSKHRDSNK 97
S+TC N + D + I+H+ LC +G + ++ +HR SN+
Sbjct: 367 SNTCVNYSDVDENGIVHMMLCRVVMGN---VEIVHHGSKQHRPSNE 409
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/64 (23%), Positives = 28/64 (43%)
Frame = +3
Query: 246 PCTKDGKIFKRALPEALPTACGRCTPKQKLAFRTLLLAIRAKSEPRFLELLDKYDPNRAS 425
PC D + R + ++L ++ A L++ KS PR +++ +P A
Sbjct: 313 PCLHDSRRLNRVIDKSLNGQYSTRAVQKAAAIAYQCLSVSPKSRPRMSAVVEALEPLLAM 372
Query: 426 RDGL 437
DG+
Sbjct: 373 DDGI 376
>03_03_0118 +
14597863-14597929,14598844-14599806,14599909-14599936,
14600288-14600666
Length = 478
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = -3
Query: 198 SVILHLCLCYHFVGGFAALSVIPPPVSKHRDSNKLLIFKVIRNSSMKVGVGPSRS 34
+++L +CL + G + + IP P + + K++ K +++ + +G G RS
Sbjct: 10 TILLLICLVCNASGTYVGANTIPSPENSPSEFAKIVQSKQTKHARVFIGGGDHRS 64
>04_01_0446 - 5815231-5816202
Length = 323
Score = 27.5 bits (58), Expect = 5.3
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 150 AALSVIPP-PVSKHRDSNKLLIFKVIRNSSMKVGVGPSRSPSCRNFPARAR 1
+A S++PP P S+ R+S V SS + S SPSCR P R R
Sbjct: 210 SATSLVPPLPSSRSRNSTFTRAVAVATLSSNLMARPNSSSPSCR-APRRGR 259
>09_06_0307 -
22190310-22190468,22190516-22190569,22190677-22191053,
22191234-22191436,22192798-22192925
Length = 306
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 259 MEKYSSVLYLKLYQQPVDVAL 321
+ K + L LK+YQQP+ VAL
Sbjct: 206 VNKSEAALLLKVYQQPISVAL 226
>07_03_1520 +
27415266-27415507,27415608-27415722,27415761-27415815,
27415862-27417849,27418161-27418589
Length = 942
Score = 27.1 bits (57), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 252 CMALYPSHTCNNQEEFDHSVILHLCLC 172
C+ + C ++ F H VIL LC+C
Sbjct: 212 CITSLVNSPCGHKMSFLHPVILFLCMC 238
>02_01_0588 + 4350971-4351514,4351639-4351703
Length = 202
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 430 SLLARLGSYLSSSSKNRGSLLALIARSRVRKAS 332
S L L S L SSSKN+ ++ L R R K+S
Sbjct: 7 SFLKNLLSSLKSSSKNKAAMSTLSERKRAIKSS 39
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -3
Query: 153 FAALSVIPPPVSKHRDSNKLLIFKVIRNSS 64
F SVI PPV K +SN LI VI NS+
Sbjct: 1391 FNRFSVIYPPVPKQNNSNMFLIC-VIANST 1419
>04_01_0056 -
579934-579993,580064-580243,580349-580507,581004-581050,
583772-583895,584093-584956
Length = 477
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 321 PKQKLAFRTLLLAIRAKSEPRFLELLDKYDP 413
P ++ +F T + A S F+ LLD+Y P
Sbjct: 90 PAREASFNTTFTVVAAASPVAFVVLLDRYPP 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,951
Number of Sequences: 37544
Number of extensions: 213268
Number of successful extensions: 549
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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