Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E03
         (529 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   0.72 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    24   0.72 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    24   0.72 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   5.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.1  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 336 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN-SNQTCYNCKKSGHISR 482
           A E        SC   N +  ++ NC   GR N +N+     +K  H ++
Sbjct: 227 ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 276


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 336 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN-SNQTCYNCKKSGHISR 482
           A E        SC   N +  ++ NC   GR N +N+     +K  H ++
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 65


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 0.72
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +3

Query: 336 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN-SNQTCYNCKKSGHISR 482
           A E        SC   N +  ++ NC   GR N +N+     +K  H ++
Sbjct: 16  ALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNK 65


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 372 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 458
           C +CNK+   A N     R +S +  + C
Sbjct: 24  CIDCNKSFSQAANLTAHVRTHSGEKPFRC 52


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 372 CYNCNKTGHIARNCPEGGRDNSNQTCYNC 458
           C +CNK+   A N     R +S +  + C
Sbjct: 280 CIDCNKSFSQAANLTAHVRTHSGEKPFRC 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,831
Number of Sequences: 336
Number of extensions: 2212
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)