Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E03
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 109 3e-25
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 57 1e-09
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 46 5e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 45 8e-06
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.19
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.57
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 1.3
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.3
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.7
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 3.0
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 4.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 7.0
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 9.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.2
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 109 bits (262), Expect = 3e-25
Identities = 56/138 (40%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 323
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 324 TGHIARECAQSPDE---PSCYNCNKTGHIARNC-----PEGGR---DNSNQTCYNCKKSG 470
GH+ R+C SP+ CY C + GHIAR+C GGR SN CY C G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Query: 471 HISRNCPDGTKTCYVCGQ 524
H +R+C G K CY CG+
Sbjct: 126 HQARDCTMGVK-CYSCGK 142
Score = 92.7 bits (220), Expect = 3e-20
Identities = 35/86 (40%), Positives = 46/86 (53%)
Frame = +3
Query: 231 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 410
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 411 CPEGGRDNSNQTCYNCKKSGHISRNC 488
CP CY C + GHI+R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 92.7 bits (220), Expect = 3e-20
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Frame = +3
Query: 144 SVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC-----KEEADRC 308
S+CY CN+TGH A ECT+ +Q + C+ C GH RDC + C
Sbjct: 36 SICYNCNQTGHKASECTE----------PQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 309 YRCNGTGHIARECAQSPDEP-----------SCYNCNKTGHIARNCPEGGRDNSNQTCYN 455
Y+C GHIAR+C + + +CY C GH AR+C G + CY+
Sbjct: 86 YKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK------CYS 139
Query: 456 CKKSGHISRNCPDGT--KTCYVCGQP 527
C K GH S C + + CY C QP
Sbjct: 140 CGKIGHRSFECQQASDGQLCYKCNQP 165
Score = 91.9 bits (218), Expect = 5e-20
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 150 CYKCNRTGHFAREC-TQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 326
CYKC R GH AR+C T G G +R C+ C GH ARDC +CY C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKI 143
Query: 327 GHIARECAQSPDEPSCYNCNKTGHIARNC 413
GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 144 GHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 54.8 bits (126), Expect = 8e-09
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 138 SSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD--RCY 311
S+ CY C GH AR+CT G KC+ C + GH + +C++ +D CY
Sbjct: 114 SNMNCYACGSYGHQARDCTMG-------------VKCYSCGKIGHRSFECQQASDGQLCY 160
Query: 312 RCNGTGHIAREC 347
+CN GHIA C
Sbjct: 161 KCNQPGHIAVNC 172
Score = 30.7 bits (66), Expect = 0.14
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 147 VCYKCNRTGHFARECT 194
+CYKCN+ GH A CT
Sbjct: 158 LCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 57.2 bits (132), Expect = 1e-09
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +3
Query: 231 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 392
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 393 GHIARNCPEG--GRDNSNQTCYNCKKSGHISRNCPDGTK 503
GH++ C + G C C H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 49.6 bits (113), Expect = 3e-07
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Frame = +3
Query: 150 CYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 317
C+ C + GH ++C + A+D CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKD-----NVSICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 318 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRDN 434
+ GH++ +C Q+P P C C+ H+A++C + +D+
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDD 173
Score = 37.5 bits (83), Expect = 0.001
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 339 RECAQSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCKKSGHISRNC----PDGTKT 506
R Q + C+ C + GHI ++CPE +DN + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPE-AKDNVS-ICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 507 CYVC 518
C++C
Sbjct: 126 CFIC 129
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Frame = +3
Query: 129 SKMSSSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDCKE----- 293
+K + S+C++C H C++ G + KCF C+ GH + C++
Sbjct: 95 AKDNVSICFRCGSKEHSLNACSKKG--------PLKFAKCFICHENGHLSGQCEQNPKGL 146
Query: 294 --EADRCYRCNGTGHIARECAQ 353
+ C C+ H+A++C Q
Sbjct: 147 YPKGGCCKFCSSVHHLAKDCDQ 168
Score = 34.3 bits (75), Expect = 0.011
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 432 NSNQTCYNCKKSGHISRNCP---DGTKTCYVCG 521
N ++ C+ C++ GHI ++CP D C+ CG
Sbjct: 74 NRDKFCFACRQQGHIVQDCPEAKDNVSICFRCG 106
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 45.6 bits (103), Expect = 5e-06
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 16/94 (17%)
Frame = +3
Query: 258 NRTGHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSCYNCNK 389
+R +F D E+ C+ C G GHI+++C + P C NC
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGL 132
Query: 390 TGHIARNCPEGGRDNSNQTCYNCKKSGHISRNCP 491
GHIA C E R + C C H S CP
Sbjct: 133 LGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 41.5 bits (93), Expect = 8e-05
Identities = 37/145 (25%), Positives = 50/145 (34%), Gaps = 26/145 (17%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECTQ---GGVGARDAGFNRQ---REKCFKCNRTGHFARDCKEEAD 302
S VC+ C GH +++C GA D + + +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 303 R----CYRCNGTGHIARECAQ----------------SPDEPSCYNCNKTGHIARNCPEG 422
R C C+ H + C S CYNC H +C
Sbjct: 146 RGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASDEHFGDDCTLP 205
Query: 423 GRDNSNQTCYNCKKSGHISRNCPDG 497
R N ++ C+ NCP G
Sbjct: 206 SRSNYPESTAFCE------ANCPSG 224
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 372 CYNCNKTGHIARNCPEGGRDNSNQTCYNCKK-SGHISRNCPDGTKTCYVCG 521
C+NC GHI+++CP + C C HIS CP TK C CG
Sbjct: 89 CHNCKGNGHISKDCP-------HVLCTTCGAIDDHISVRCP-WTKKCMNCG 131
Score = 35.5 bits (78), Expect = 0.005
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 423 GRDNSNQ-TCYNCKKSGHISRNCPDGTKTCYVCG 521
G D S C+NCK +GHIS++CP C CG
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCG 111
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.8 bits (101), Expect = 8e-06
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 372 CYNCNKTGHIARNCPEGGRDNSNQTCYNCKKSGHISRNCP 491
C NC GH +CPE N C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +3
Query: 234 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 368
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 31.5 bits (68), Expect = 0.080
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 426 RDNSNQTCYNCKKSGHISRNCPD 494
RD+ NQ C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/49 (28%), Positives = 18/49 (36%)
Frame = +3
Query: 141 SSVCYKCNRTGHFARECTQGGVGARDAGFNRQREKCFKCNRTGHFARDC 287
+ VC C GH +C + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCP-------ERINHTMNIVCRHCGSIGHIARDC 349
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 30.3 bits (65), Expect = 0.19
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 351 QSPDEPSCYNCNKTGHIARNCPEGGRDNSNQTCYNCK-KSGHISRNCPDGTKTCYVCG 521
++ ++P+ N + N N TC NC+ ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 408 NCPEGGRDNSNQTCYN----CKKSGHISRNCPDGTKTCYVC 518
+CP+G + C+N CK +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 228 NRQREKCFKCNRTGHFARDCKEEA 299
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 144 SVCYKCNRTGHFAREC 191
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 270 HFARDCKEEADRCYRCNGTGHIAREC 347
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 471 HISRNCPDGTKTCYVCGQ 524
H + CP TCY CG+
Sbjct: 1794 HTGKACPVRLSTCYKCGK 1811
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 246 CFKCNRTGHFARDCK 290
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 144 SVCYKCNRTGHFAREC 191
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 270 HFARDCKEEADRCYRCNGTGHIAREC 347
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 471 HISRNCPDGTKTCYVCGQ 524
H + CP TCY CG+
Sbjct: 1794 HTGKACPVRLSTCYKCGK 1811
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 246 CFKCNRTGHFARDCK 290
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Frame = +3
Query: 339 RECAQSPDEPS-----CYNCNKTGHIARNCPEGGRDN 434
R A PD+P CY C + GH + CP N
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACPTNADPN 205
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +3
Query: 246 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 371
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 25.4 bits (53), Expect = 5.3
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +3
Query: 147 VCYKCNRTGHFAREC 191
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 165 CCTCSIRLNSFSIRCITC 112
C TC R+N SIRC++C
Sbjct: 38 CSTCK-RINKRSIRCLSC 54
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = -2
Query: 327 PCHYICSNGQPPPCSRAQSARCGC 256
PC +C G PPC+ C C
Sbjct: 293 PCPLLCHPGPCPPCTATVEKFCLC 316
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 351 QSPDEPSCYNCNKTGHIARN--CPEGGR 428
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 423 GRDNSNQTCYNCKKSGHISRNCPDGTKTCYVCGQP 527
GR + + C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 7.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 225 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 323
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 268 PVRLHLKHFSRCRLKPASRAPTPPCVHS 185
PVR ++ R +LKP+ AP PP +++
Sbjct: 29 PVRYEVEDDLR-KLKPSRTAPKPPAINT 55
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 9.2
Identities = 21/77 (27%), Positives = 30/77 (38%)
Frame = +3
Query: 255 CNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRDN 434
C+ H C+ +G REC + C++C K I N RDN
Sbjct: 71 CSSCAHTCTACRMRIKDYALMSGYDSYHRECFR------CHDCRKQ-IIDSNFK---RDN 120
Query: 435 SNQTCYNCKKSGHISRN 485
C +CK+ H SR+
Sbjct: 121 RTIFCNDCKQVRHPSRS 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,674,289
Number of Sequences: 5004
Number of extensions: 29448
Number of successful extensions: 158
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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