Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E02
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.42
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 0.74
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 25 1.7
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch... 25 2.2
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom... 25 3.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 5.2
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 24 5.2
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 23 6.9
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 23 6.9
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 23 6.9
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 23 6.9
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 23 9.1
>SPAC630.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 0.42
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Frame = +3
Query: 27 PP--DQPPWQYIII--PCVANELRYYILVRVHHLLL 122
PP +QPPW ++++ PC+ N RY +H +++
Sbjct: 184 PPNKEQPPWLFLVLPSPCITNS-RYMDEKTLHSIMI 218
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 0.74
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 93 ILVRVHHLLLSGKKSLNIGDLLMVEQLKQSDTVTDQTPSH 212
IL+R +H+ L GKK ++ ++E+++ ++ + S+
Sbjct: 743 ILIRFYHIRLYGKKCKSLYQFCILEEMRLKKSIEELAASN 782
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 1.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 234 ITWSEDLYEKAFDRLQY 184
ITWS+ L ++A RLQY
Sbjct: 22 ITWSKSLIDEARSRLQY 38
>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 282 FRLTFPITPGELKELEITWSEDLYEKAFDRLQYLTV*VVQPLVSH 148
F L++ I+ G L + W L + D++ L + PLV H
Sbjct: 189 FILSYSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHFFPPLVLH 233
>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 3.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 144 IGDLLMVEQLKQSDTVTDQTPSHTSPLTKLFPTPSALPE 260
+ ++ + + + SD V Q P +PL + P P PE
Sbjct: 52 VNKMISLPKERTSDGVLLQLPETVTPLPRAKPLPKPKPE 90
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 23.8 bits (49), Expect = 5.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 166 STISKSPILRDFFPERSK 113
S + K P++R F P +SK
Sbjct: 492 SRLQKGPLMRSFVPNKSK 509
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 23.8 bits (49), Expect = 5.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 168 QLKQSDTVTDQTPSHTSPLTKLFPTPSALPELWGKLN 278
Q K ++T+T S + P + LPELW LN
Sbjct: 553 QSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLN 589
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 237 PTPSALPELWGKLNESMS 290
P PS P+LW LN ++S
Sbjct: 457 PPPSRYPDLWVILNVTLS 474
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 23.4 bits (48), Expect = 6.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 90 YILVRVHHLLLSGKKSLNIGDLLMVEQLKQSDTVTDQTPSH 212
+IL H +L +G L +E LKQ V +TP H
Sbjct: 66 FILSNGHACVLQYIMCHLLGYKLTIEDLKQFRQVGSKTPGH 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 24 FPPDQPPWQYIIIPCVANELRYYILVRVHHLLLSGK 131
F + PP +I+I ++ Y L ++H+ +SG+
Sbjct: 544 FKHEVPPTDFILIRNSSSYGSKYYLKNINHMFVSGQ 579
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 23.4 bits (48), Expect = 6.9
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = -3
Query: 205 GV*SVTVSDCLSCS 164
G+ S++++DCL+CS
Sbjct: 55 GIASISLNDCLACS 68
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 190 TVSDCLSCSTISKSPILRDFF 128
TV D ++ K PILRDF+
Sbjct: 76 TVEDDMTLPLDKKLPILRDFY 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,926
Number of Sequences: 5004
Number of extensions: 25538
Number of successful extensions: 76
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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