Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_E02
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155 31 0.16
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 29 0.47
05_06_0174 - 26149663-26149885,26150353-26151701 27 2.5
11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133 27 3.3
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 27 3.3
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 26 4.4
08_01_0984 - 9952630-9954132 26 4.4
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 26 4.4
06_02_0213 + 13087707-13088423 26 5.8
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 26 5.8
12_01_0056 + 482987-483019,483153-483362,483503-483604,484601-48... 25 7.7
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508... 25 7.7
02_01_0671 + 4985040-4985186,4985543-4985860 25 7.7
01_06_0878 - 32669790-32669846,32670206-32670299,32670384-326704... 25 7.7
01_06_0788 + 32007818-32007935,32008065-32008159,32008443-320085... 25 7.7
>11_06_0133 + 20443871-20445122,20445642-20446625,20446776-20447155
Length = 871
Score = 31.1 bits (67), Expect = 0.16
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 60 IPCVANELRYYILVRVHHLLLSGKKSLNIGDLLMVEQLKQSDT-VTDQTPSHTSPLTKLF 236
IP L + +R+H LSG+ L+I +LL VE L D + + P LTKL
Sbjct: 165 IPTEVGALENLVDLRLHKNGLSGEIPLHISNLLSVEYLYLRDNWFSGEIPPALGNLTKLR 224
Query: 237 PTPSALPELWGKLNESM 287
A +L G + S+
Sbjct: 225 YLDLASNKLSGSIPSSL 241
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 117 LLSGKKSLNIGDLLMVEQLKQSDTVTDQTPSHTSPLTKLFPTPSALPELWGK 272
L +G+++++ G ++ L Q+D V H L+K P S + EL+GK
Sbjct: 110 LYNGQEAVSTG---FIKLLNQADCVVSTYRDHVHALSKGVPARSVMAELFGK 158
>05_06_0174 - 26149663-26149885,26150353-26151701
Length = 523
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 60 IPCVANELRYYILVRVHHLLLSGKKSLNIGDLLMVEQLK-QSDTVTDQTPSHTSPLTKL 233
IP ELR + + + + SG +GDL M+++L S+ +T P+ + LT L
Sbjct: 205 IPSRIGELRSLVGLDLSYNSFSGSIPGQLGDLAMLQKLDLSSNNLTGGVPATITGLTSL 263
>11_01_0468 + 3629974-3631051,3631102-3632649,3632766-3633133
Length = 997
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 60 IPCVANELRYYILVRVHHLLLSGKKSLNIGDLLMVEQLKQS-DTVTDQTPS 209
IP +L + + H LSG +++GDL ++EQ+ S + +T Q P+
Sbjct: 534 IPTSFGKLISLKFLNLSHNKLSGSIPVSLGDLQLLEQIDLSFNHLTGQVPT 584
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 204 PSHTSPLTKLFPTPSALPEL 263
PSH SP K+ P PS +L
Sbjct: 552 PSHASPAKKVLPNPSGFKKL 571
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 57 IIPCVANELRYYILVRVHHLLLSGKKSLNIGDLLMVEQLKQS 182
IIP +R ++ + H L+G +++G+L ++EQL S
Sbjct: 469 IIPTSLGNIRSLKVLNLSHNKLTGSIPVSLGNLQLLEQLDLS 510
>08_01_0984 - 9952630-9954132
Length = 500
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -2
Query: 95 NVISQFVGDTRYNDVLPGRLVRWEI 21
+VIS ++ D YND+L +L+ + +
Sbjct: 278 DVISSYINDPDYNDLLHSKLISYMV 302
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 144 IGDLLMVEQLKQSDTVTDQTPSHTSPLTKL 233
+ DLL++ L SD+ TD+ P+ SP+ +L
Sbjct: 46 VDDLLLL--LSSSDSDTDEPPARPSPIAQL 73
>06_02_0213 + 13087707-13088423
Length = 238
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 59 YTLCRQRIEILHSSPSAPFTSFG 127
YT+C + +L SP+ F SFG
Sbjct: 36 YTVCGAEVAMLVKSPAGKFFSFG 58
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 27 PPDQPPWQYIIIPCVANELRYYILVRVHHLLLSGKKSLNIGDLLMVEQLKQSDTVTDQTP 206
PP + + +II N L + HHL L+ ++SL E + DT T
Sbjct: 567 PPTKQRLRRLIIRSCNNILSWLKNHHRHHLRLASRRSLPSD-----EDINTIDTSTSPHV 621
Query: 207 SHTSPLTK 230
H P+T+
Sbjct: 622 QHDGPITR 629
>12_01_0056 +
482987-483019,483153-483362,483503-483604,484601-484700,
484775-484866,484962-485738
Length = 437
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 276 LTFPITPGELKELEITWSEDLYEKAFDRLQY 184
LT+ I E +E ++ W ED FDR Y
Sbjct: 78 LTYQILEEEDEEEDVNWDEDDTVDNFDRATY 108
>03_06_0674 -
35449373-35449465,35449959-35450112,35450763-35450860,
35450947-35451234,35451313-35451503,35451789-35452006,
35452314-35452653,35452726-35453167
Length = 607
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 190 TVSDCLSCSTISKSPILRDFFPERSKW 110
T +DC SCS + +PI + P W
Sbjct: 233 TGTDCYSCSFANSTPIHETYQPRWDYW 259
>02_01_0671 + 4985040-4985186,4985543-4985860
Length = 154
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 53 HHYTLCRQRIEILHSSPSAPFTSFGK 130
HH TL R+ ++H+SP +SF K
Sbjct: 70 HHNTLFCHRLVVIHTSPGHWTSSFVK 95
>01_06_0878 -
32669790-32669846,32670206-32670299,32670384-32670499,
32670786-32671096,32672243-32672364,32672754-32672870,
32672982-32673054,32673416-32673542,32673659-32673727,
32673811-32674170,32674493-32674633
Length = 528
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 165 EQLKQSDTVTDQTPSHTSPLTKLFP-TPSALPELWGKLNES 284
EQLKQ +D + SPL L P T AL EL ++ S
Sbjct: 339 EQLKQKQVNSDSSDKKDSPLQTLEPSTLQALYELISLVHNS 379
>01_06_0788 +
32007818-32007935,32008065-32008159,32008443-32008529,
32008620-32008682,32008764-32008801,32009355-32009463
Length = 169
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 10 LYQNISHRTNRPGNTSLYL 66
+YQN+ + +RPG T+ YL
Sbjct: 124 IYQNLLFKPDRPGETNEYL 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,844
Number of Sequences: 37544
Number of extensions: 162880
Number of successful extensions: 493
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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