Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_E01
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876     28   5.2  
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300     27   6.9  
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291...    27   9.1  

>02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876
          Length = 250

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +3

Query: 138 PAVFMDISLEDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDIE 317
           P    D+ L++Q  +LR+   G G      +   G         G  D  FKE+ +  ++
Sbjct: 96  PRPIQDL-LKEQIAKLREQGSGGGGGNRNRRGGSGDSG------GPEDESFKESLDELVQ 148

Query: 318 AILNSIVSIMVSIPLERGENL 380
            IL ++  I+V I + RGE L
Sbjct: 149 VILATVAFILVYIHIIRGEEL 169


>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
          Length = 392

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +3

Query: 183 LRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAILNSIVSIMVSIPL 362
           LRK F+ + A      +  G   D  K   V D CF    ESD E   N + +   +I +
Sbjct: 281 LRKAFQKVCAPFEPLSNVDGESGDDDKGKNVSDVCFMARGESDTEYEDNEVSAFEEAITI 340

Query: 363 ERGEN 377
              +N
Sbjct: 341 LSAKN 345


>04_03_0505 +
           16628145-16628217,16628612-16628767,16628964-16629125,
           16629699-16629842,16629952-16630028,16630710-16630874,
           16630988-16631341
          Length = 376

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/91 (23%), Positives = 40/91 (43%)
 Frame = +3

Query: 213 EISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAILNSIVSIMVSIPLERGENLILAF 392
           E      P G ED+   + G  D C  EAN+ D     + + ++ V+ P     N     
Sbjct: 288 ESKHSSDPSGDEDEQVVVGGDQDGCANEANDIDSSGDHHQVAAV-VTKPC--NANASQEI 344

Query: 393 SERLTKAPGPKLGVVALQSLWRLYNNLETNS 485
             ++T + G +    +  +++RL +  E++S
Sbjct: 345 INKMTNSDGMQATKGSKAAVFRLVDYSESDS 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,965,378
Number of Sequences: 37544
Number of extensions: 239824
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)