Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D24
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    32   0.054
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.0  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   2.7  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      26   3.5  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    26   3.5  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   4.7  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   6.2  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.1  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.1  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   8.1  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    25   8.1  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   8.1  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 323 VSIKLFRFIQHNIDQFIPTICKSLV 249
           +SI++F F+  NI   +PT CKSLV
Sbjct: 271 LSIRIFPFVAENIFNVLPTTCKSLV 295


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 147 VSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN 266
           +SDL    K +SKN+H++   Y     +A R ++  R+ N
Sbjct: 217 LSDLDSIYKRESKNWHIVSQFYNMLELEAARQKLENRYLN 256


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 123 VVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQ 254
           VV+  I   S + DAAK  + N     DE+     + IR+ +N+
Sbjct: 57  VVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVENIRYEVNE 100


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 103 GSVIISPFHSEFSSTESPN 47
           G+ I+ PFH  FSS   PN
Sbjct: 139 GTQIVGPFHPSFSSIVGPN 157


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 393 VEEDYQFLSELAALKAITEKVNEGVIKPDNVIDFYNLRFRSLHALSDFHGP 545
           VEED     ++   + ITE+ N  + K  +   F+ L    L  ++D+H P
Sbjct: 219 VEEDRVLSEKMELFQWITEE-NLDIKKQKSSSKFFKLAADELRRINDYHAP 268


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 294 LNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEG 464
           L++ E+ +T  +       PK TK  +Q  +   EED Q  S    +K+  E + EG
Sbjct: 586 LSDEEEDDTNKSTSKSPKTPKNTKFGYQEFEGIDEEDAQDYSPSPLIKSFNELMFEG 642


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 243 RINQRFTNGGNKLINIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDY--QFL 416
           +I  R   GG   IN+++++ + FN Y  +FG   +  V     +   YS    Y   F 
Sbjct: 265 KIMSRSFKGG---INVVVSDLQMFNEYKRIFGPKVLSLVVTDGQEPDTYSENVHYTPNFK 321

Query: 417 SELAALKAITEKV 455
             LA L+A    +
Sbjct: 322 GALAYLEAYQNSI 334


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = +3

Query: 258 FTNGGNKLINIMLNEPEKFNTYSNVFGYIPV-PKVTKQSFQHLKYSVEEDYQFLSELAAL 434
           F   G+KLI++ L +  + +  S +   +   P +   +   + Y  +E  + L+    L
Sbjct: 315 FKKRGSKLISLELTDTARIHV-SVINAIVDCCPNLISLNLSRIFYLDDECVRLLAGCRNL 373

Query: 435 KAITEKVNEGVIKPDNVIDFYNLRFRSLHALS 530
            ++  +   G+I   +++D  N     LH LS
Sbjct: 374 VSLKIESPGGIINDGSILDVLNQIGSGLHTLS 405


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 544 GPWKSDRAWSERNLKL*KSITLSGL 470
           G W SD    E+NL + K I L GL
Sbjct: 257 GEWLSDSITKEQNLTINKEIGLCGL 281


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 477 DNVIDFYNLRFRSLHALSDFHG 542
           +N  +F+NL+F  L  L  FHG
Sbjct: 595 ENENNFWNLKFNLLTMLRSFHG 616


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 390 SVEEDYQFLSELAALKAITEKVNEGVIKPDNV 485
           S+E+  QFLS +   K I  K N+  I P N+
Sbjct: 387 SIEQCIQFLSLIREQKEIFNKNNKEFINPLNI 418


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 574 FLSLLSCKEWGPWKSDRAWSE 512
           FLS+L    WGP K  + W++
Sbjct: 243 FLSILRNSPWGPNKERKFWNQ 263


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 384 KYSVEEDYQFLSELAALKAITEKVNEGVIKPDNVIDFYNLRFRSLHALSDF 536
           K +   D   L E+ +L  ++E  NE ++   N+ D Y  +FR LH + +F
Sbjct: 71  KLAKVSDATRLREVHSLLRLSE--NENIV---NIFDLYIDQFRCLHIVMEF 116


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 261 TNGGNKLINIMLNEPEKFNTYSNVF 335
           + GG++++N +L E +  N+  NVF
Sbjct: 613 SGGGDRVVNQLLTEMDGVNSKKNVF 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,490
Number of Sequences: 5004
Number of extensions: 45112
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)