Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_D24
(585 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 36 0.028
AL022289-1|CAA18372.1| 354|Caenorhabditis elegans Hypothetical ... 31 0.80
AC025726-34|AAY43986.1| 308|Caenorhabditis elegans Hypothetical... 29 3.2
AC006607-4|AAK68171.1| 309|Caenorhabditis elegans Serpentine re... 28 5.6
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 27 7.4
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 27 7.4
Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical p... 27 9.8
CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical ... 27 9.8
AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative pota... 27 9.8
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
F29G6.3c protein.
Length = 1453
Score = 35.5 bits (78), Expect = 0.028
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +3
Query: 294 LNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEGV 467
+ E+ N Y Y+PV K K + + V +D+Q++ + + K I+EKV+E V
Sbjct: 1161 ITRTEQTNGYDRRHNYVPVGKTAKATTTDIH--VHQDHQYVPQASPRKTISEKVSEHV 1216
>AL022289-1|CAA18372.1| 354|Caenorhabditis elegans Hypothetical
protein ZK1225.1 protein.
Length = 354
Score = 30.7 bits (66), Expect = 0.80
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 291 MLNEPEKF-NTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFLSELAALKAITEKVNEGV 467
+L+EPE F NT + V+ S HLKY++E K I ++N V
Sbjct: 92 LLDEPESFLNTTETSRSVESLVFVSATSDSHLKYTLESYASIRRYYPTNKFIIYRLNVNV 151
Query: 468 IKPDNVIDFYNLRFRSLHA 524
+ D NL FR A
Sbjct: 152 TPLSHFPDNENLEFRHFEA 170
>AC025726-34|AAY43986.1| 308|Caenorhabditis elegans Hypothetical
protein Y71G12B.30 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
Frame = -2
Query: 185 LRFQFCSICKVRYSIYIY--FNYSFWSVER--------VCDHKSIPFGIL 66
+++ F + CK RYS+ +Y F ++F+ + +C H IPFG+L
Sbjct: 144 MQYGFYNECKRRYSVTLYETFQWAFYCMPLCAIVGGRIMCMHGGIPFGLL 193
>AC006607-4|AAK68171.1| 309|Caenorhabditis elegans Serpentine
receptor, class xa protein5 protein.
Length = 309
Score = 27.9 bits (59), Expect = 5.6
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -2
Query: 197 QVIVLRFQFCSICKVRYSIY 138
+ I+L+F+FC +C + + +Y
Sbjct: 254 RTIILQFRFCIVCSINFLVY 273
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 375 QHLKYSVEEDYQFLSELAALKAITEKVNEGVIK 473
QH+K++ E+ Y F +E +K + V E + K
Sbjct: 1121 QHIKFTEEQKYMFENENIYVKLVNLNVEEDIAK 1153
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 375 QHLKYSVEEDYQFLSELAALKAITEKVNEGVIK 473
QH+K++ E+ Y F +E +K + V E + K
Sbjct: 1121 QHIKFTEEQKYMFENENIYVKLVNLNVEEDIAK 1153
>Z29116-4|CAA82370.2| 206|Caenorhabditis elegans Hypothetical
protein ZK507.4 protein.
Length = 206
Score = 27.5 bits (58), Expect = 7.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = -2
Query: 161 CKVRYSIYIYFNYSFWSVERVCDHKSI 81
C + Y+Y+ W+ E++ +H+SI
Sbjct: 45 CATFHENYVYYCRGIWTAEKLLEHRSI 71
>Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical
protein F55C5.3a protein.
Length = 569
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 99 DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 278
DP ++VE +GV L + L+ + L VDE++ ++ RI Q + + +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519
Query: 279 LI 284
+
Sbjct: 520 YV 521
>CU457741-9|CAM36350.2| 252|Caenorhabditis elegans Hypothetical
protein C42C1.9 protein.
Length = 252
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 186 NYHLIVDEYEPDTFDAIRHRINQRFTN-GGNKLINIMLNEPEKFNTYSNVFGYIPVP 353
+Y I ++Y+ T+ +R + + + N + +I LN + TY + +G P+P
Sbjct: 55 DYDQISEDYDFVTYALLREKRSSKNNNMKTSHVITSTLNTEKSLETYLDEYGKFPLP 111
>AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative
potassium channel subunitn2P24 protein.
Length = 569
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 99 DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 278
DP ++VE +GV L + L+ + L VDE++ ++ RI Q + + +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519
Query: 279 LI 284
+
Sbjct: 520 YV 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,332,280
Number of Sequences: 27780
Number of extensions: 239471
Number of successful extensions: 723
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -