Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D23
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   158   4e-40
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   154   6e-39
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.88 
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    27   2.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   3.5  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   4.7  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   6.2  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   8.2  
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    25   8.2  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   8.2  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  158 bits (384), Expect = 4e-40
 Identities = 81/156 (51%), Positives = 108/156 (69%), Gaps = 2/156 (1%)
 Frame = +3

Query: 9   IDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPIS 188
           IDI   H RK +R++  S++V               T+++FN+ IL+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 189 LSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 362
           +S++A     K  + EG   V+VGTV++D RL TVPK++VAAL  T+ ARARIL AGGE+
Sbjct: 63  ISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEV 122

Query: 363 LTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 470
           LT DQLALRAPTG  TVL++G+++AREA RHFG  P
Sbjct: 123 LTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGP 158


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  154 bits (374), Expect = 6e-39
 Identities = 78/156 (50%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
 Frame = +3

Query: 9   IDINHKHDRKVRRTEVKSQDVXXXXXXXXXXXXXXXTNAKFNQIILRRLFMSRINRPPIS 188
           IDI   H +K +R++  S++V               T+++FN+ IL+RLF S+ NRPPIS
Sbjct: 3   IDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62

Query: 189 LSRLAR--HMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGGEI 362
           +S++A     K  + +    VVVGTV++D R+ TVPK+++AAL  T+ ARARIL AGGE+
Sbjct: 63  ISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEV 122

Query: 363 LTFDQLALRAPTGRKTVLVQGRRNAREAVRHFGPAP 470
           LT DQLALRAPTG  TVLV+G+++AREA RHFG  P
Sbjct: 123 LTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGP 158


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.88
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 PTSDFFVPFGTPHEEAYTRGFDRCSR 250
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 234 LIAVVVGTVSNDVRLY-TVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKT 410
           L+ +VV  ++NDVRL+  V +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 411 VLVQGRRNAREAVRHFGPAPG 473
             V+G     EA  + G  PG
Sbjct: 753 --VEGALELVEAYANLGEMPG 771


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 399 GRKTVLVQGRRNAREAVRHFGPAPGA-PR 482
           G    L Q RR     V HFG APG+ PR
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPR 872


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 177 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 356
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 372 DQLALRAPTGRKTVLVQGRRNAREAVRHFGPA 467
           D++  + P G K  + Q ++  R A++H+  A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 108 PSICTVLPIVSSTHPET*LRCAELSCRVYD 19
           P +CTVLPI+   +    +    + C++YD
Sbjct: 150 PHLCTVLPIMIPVYKWWQVPYFFVGCKIYD 179


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 121 FVRLAKYLYSFTN 83
           F  LAKYLYSFT+
Sbjct: 114 FPELAKYLYSFTD 126


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 267 DVRLYTVPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGRKTVLVQGRRNARE 443
           D  L  VP +      VT   R  +   GG      +   R+ T R+T+L  G RN+R+
Sbjct: 61  DANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNSRK 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,276
Number of Sequences: 5004
Number of extensions: 36671
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)