Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D22
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    28   0.73 
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.2  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    24   9.0  

>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 206 LLCKMVHCFRGPSPSRRLLTRVVVWSCTYRMRTCVLAYNYYNHRACQHESDHYFKII 376
           L+C  +   R  S ++RL  + V    T   +T ++     N+R+ +H  DH F ++
Sbjct: 624 LICDSMTVARDLSYNKRLNAKTVTLEGTVIHKTGLITGGSSNNRSAKHWDDHDFDLL 680


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 227 CFRGPSPSRRLLTRVVVWSCTYRMRTCVLAYNYYNHRACQHESDHYFKIIFLL 385
           C +   PS      +V W     M T + A+N  +    ++E  H FK  F L
Sbjct: 280 CLQKLEPSEHDPILMVGW--LKAMNTAIRAFNILDKETAKYECLHRFKAFFTL 330


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 6/21 (28%), Positives = 16/21 (76%)
 Frame = +2

Query: 308 VLAYNYYNHRACQHESDHYFK 370
           ++ YN+++  +CQ E+ +++K
Sbjct: 44  IVNYNHFHSSSCQSEAKNFYK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,648,024
Number of Sequences: 5004
Number of extensions: 30712
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)