Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D22
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017     30   0.72 
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279...    27   6.7  
03_06_0444 - 33979319-33980044                                         27   6.7  
06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    27   8.8  
01_01_0094 - 730484-731570,732030-732715                               27   8.8  

>03_06_0452 - 34028791-34028818,34028977-34029020,34029457-34030017
          Length = 210

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 203 WLLCKMVHCFRGPSPSRRLLTRVVVWSCTYRMRTCVLAY 319
           +L+  M H FRG S SRR +   VV     ++RT +  Y
Sbjct: 108 YLMSSMWHAFRGDSTSRRSVLFSVVKESVVQVRTKIFVY 146


>07_03_1477 +
           26826661-26827019,26827218-26827338,26827813-26827962,
           26828075-26828311
          Length = 288

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -1

Query: 170 RRYCPLFNSVQKNNITCVYL 111
           +++CP FN+++  +I CVY+
Sbjct: 168 KQFCPAFNNLKTLSILCVYV 187


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 219 WFIVSAARRRRVGC*REWWSGHARTACV 302
           W ++S  R++R GC     + HA +ACV
Sbjct: 208 WTMISGKRKKRSGCGTRVRAFHAVSACV 235


>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 121 VFTYLDFKIWQVYEYNPKLIKNKSKTVQNNYL 26
           +F  L    W   + NP+++   S+TVQ+ YL
Sbjct: 411 LFPGLSLVQWMAMQQNPQMLTAASQTVQSPYL 442


>01_01_0094 - 730484-731570,732030-732715
          Length = 590

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 236 GPSPSRRLLTRVVVWSCTYRMRTCVLAYNYYNHRACQHESDHYFKII 376
           GPS +R L  + + W+        V   N Y H  CQ+ S  +  ++
Sbjct: 112 GPSYTRELTLQGIWWATFVNCSQAVKNNNKYIHVDCQNTSSSFVYVL 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,133,427
Number of Sequences: 37544
Number of extensions: 187798
Number of successful extensions: 348
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)