Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D21
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   4.0  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   5.3  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    24   7.0  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    23   9.2  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 124 YECELRGAHVGSSPQLGPGVYSSLRHFTSAFTKIM---RHSNL 5
           Y   L G     SP++     +S+ HF SA +K++   RH+++
Sbjct: 234 YTYNLLGKSTDESPKITISAGTSMSHFPSASSKLIQMRRHAHM 276


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 68  CILITSAFHVSFHENNET 15
           C+L    FH + HE +ET
Sbjct: 120 CVLCAPCFHATNHEGHET 137


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 108 EVRMLVLVHSWDPVYTHHF 52
           +VR+   +  +DPVY  HF
Sbjct: 230 DVRLYTTIVRFDPVYVQHF 248


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 9   LLCLIIFVKADVKCRSDEYTPGPNCG-LEPTCA 104
           +L ++ F++ + KC  + + P P     +P+CA
Sbjct: 228 VLEILSFLRCNAKCVQNSFVPDPYISRYKPSCA 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,228
Number of Sequences: 5004
Number of extensions: 22180
Number of successful extensions: 30
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)