Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_D21
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    28   1.6  
04_04_0432 + 25157722-25157950,25158045-25158659,25159298-251593...    28   1.6  
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115...    26   8.5  
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851...    26   8.5  

>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 9   LLCLIIFVKADVKCRSDEYTPGPNCGLEPTCAPRSSHS 122
           ++C++     ++ C  D +TPGP      TC   S H+
Sbjct: 471 IVCILNTEDPEIPCNDDIFTPGPVASTS-TCDQNSQHN 507


>04_04_0432 +
           25157722-25157950,25158045-25158659,25159298-25159380,
           25159906-25159979,25160101-25160151,25160295-25160371,
           25160856-25161595
          Length = 622

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 102 APRSSHSYPKH-TCDCWCKPGTYRVIDTNDCVT-LEHCH 212
           AP + H YP +     WCKP    VI    C T L+H H
Sbjct: 472 APLAVH-YPSYGQASGWCKPEQDAVIAAGHCATDLQHLH 509


>05_01_0167 -
           1153778-1153927,1154006-1154797,1155602-1156408,
           1156514-1156618,1156985-1157059,1157160-1157233,
           1157388-1157450,1157549-1157647,1157704-1157811,
           1157908-1157973,1158073-1158150,1158257-1158304,
           1158381-1158440,1158527-1158610,1158902-1158949,
           1159049-1159096,1161462-1161579
          Length = 940

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 195 TLEHCH*PTRQL*LLLVIDVIRNYLT 272
           TL+ CH PTR   +++++ V+R  LT
Sbjct: 551 TLKECHIPTRN--MIVILSVLRGGLT 574


>04_04_1690 -
           35382241-35382553,35382614-35382933,35383601-35385164,
           35385254-35385372,35385701-35385811,35386068-35386595,
           35386702-35386881,35386957-35387556,35387646-35388066,
           35388183-35388280,35388372-35389260,35389366-35389544,
           35389647-35389763,35389862-35389952,35390578-35390753
          Length = 1901

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 207 SVLM*HNHWYRLL-CKFLVYTSNRKYASGTNVSYEVRMLVLVHS-WDPVYTHHF 52
           ++L  ++ +Y L+ CKFL   S+  Y++    S   R+L+  +S W P Y H F
Sbjct: 86  NLLRENDDFYELVFCKFL---SDNSYSAAVR-SAAARLLLSCYSAWTPQYPHAF 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,612
Number of Sequences: 37544
Number of extensions: 136654
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)